New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 485249826 (0.530)4 (0.120) 4/168 NT 16.5% intergenic (‑124/+173) recR/ybaB recombination protein RecR/nucleoid‑associated broad specificity regulator
?NC_002947 = 4852557 23 (0.700)intergenic (‑183/+114) recR/ybaB recombination protein RecR/nucleoid‑associated broad specificity regulator

CCGACACCTGGCAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4852313‑4852498
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtctgcttttttgtgggagcggccttgtgtcgcgaaagggGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATTTGACGCCACCGCCCCCGCTGGGT  <  NC_002947/4852557‑4852411
                                                                                                                                                                                                                                                                                                                                             
CCGACACCTGGCAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCT                                                                                                                                                                                         <  1:907890/150‑1
 CGACACCCGGCAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTG                                                                                                                                                                                        >  1:823999/1‑150
     ACCTGGCAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTT                                                                                                                                                                                    >  1:563291/1‑150
        TGGCAAGATGCGCAGGCCGTCTATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTT                                                                                                                                                                                 <  1:281147/150‑1
        TGGCAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGCGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTT                                                                                                                                                                                 <  2:63432/150‑1
           CAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTG                                                                                                                                                                              >  1:128823/1‑150
                   GCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGC                                                                                                                                                                      <  1:256121/150‑1
                      GGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTT                                                                                                                                                                   <  1:1269928/150‑1
                        CCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGT                                                                                                                                                                 <  1:981723/150‑1
                              ATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCG                                                                                                                                                           >  1:899909/1‑150
                                  GTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAG                                                                                                                                                       <  2:1210301/150‑1
                                   TTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGG                                                                                                                                                      <  2:664117/150‑1
                                         GATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTG                                                                                                                                                                              <  2:3155/120‑1
                                         GATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTG                                                                                                                                                                              >  1:3155/1‑120
                                                                     GCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAG                                                                                                                    >  2:71934/1‑150
                                                                                             TTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGA                                                                                                                                                                           >  1:868329/1‑71
                                                                                             TTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGA                                                                                                                                                                           <  2:868329/71‑1
                                                                                              TTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCA                                                                                           >  2:95969/1‑150
                                                                                              TTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGT                                                                                                                                                                               >  1:1195295/1‑66
                                                                                              TTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGT                                                                                                                                                                               <  2:1195295/66‑1
                                                                                                        CGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGC                                                                                 <  1:71934/150‑1
                                                                                                          GGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGA                                                                               <  1:95969/150‑1
                                                                                                                                                                               TCGCGAAAGGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATTTGACGCCACCGCCCC          >  1:457357/1‑150
                                                                                                                                                                                       GGGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATTTGACGCCACCGCCCCCGCTGGGT  >  1:398777/1‑150
                                                                                                                                                                                        GGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGC                                  >  1:890775/1‑117
                                                                                                                                                                                        GGGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGC                                  <  2:890775/117‑1
                                                                                                                                                                                                                                                                                                                                             
CCGACACCTGGCAAGATGCGCAGGCCGTCGATCAGTTGGCGGATGAGAGGGCTGAAGCTCATGGGAAAGGCCTGACAATTCAATAAGAGGCGGTTTATACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4852313‑4852498
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtctgcttttttgtgggagcggccttgtgtcgcgaaagggGCGCGAAGCGGCCCCGGGATTTCAGCTTCGCAGCACAGAGTGCCGGGGCTGCTTCGCAGCCCTTTCGCGACACAAGGCCGCTCCCACAAAAAAGCAGACCTTGCAGGCTTTGGGCGAGGTGATTTGACGCCACCGCCCCCGCTGGGT  <  NC_002947/4852557‑4852411

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.