| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4852498 | 26 (0.530) | 4 (0.120) | 4/168 | NT | 16.5% | intergenic (‑124/+173) | recR/ybaB | recombination protein RecR/nucleoid‑associated broad specificity regulator |
| ? | NC_002947 | = 4852557 | 23 (0.700) | intergenic (‑183/+114) | recR/ybaB | recombination protein RecR/nucleoid‑associated broad specificity regulator | |||||
ACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAG > NC_002947/4852411‑4852700 | aCCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccc > 1:398777‑M2/1‑147 (MQ=255) ggggCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcga > 1:457357‑M2/1‑139 (MQ=255) gCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCcc < 2:890775‑M2/117‑3 (MQ=255) gCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCcc > 1:890775‑M2/1‑115 (MQ=255) aGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAAt > 2:864897/1‑139 (MQ=255) aGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAAt < 1:864897/139‑1 (MQ=255) ccTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAAcc > 2:1177584/1‑150 (MQ=255) tCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccc < 1:95969‑M2/150‑81 (MQ=255) gcgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccg < 1:71934‑M2/150‑83 (MQ=255) gcgAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACtgtt > 1:469272/1‑150 (MQ=255) cTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAgcggc > 2:151289/1‑150 (MQ=255) tGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggtataa > 2:95969‑M2/1‑58 (MQ=255) tGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAgcggcg > 2:262366/1‑150 (MQ=255) gAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGtt > 1:319031/1‑150 (MQ=255) aaGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCTAACGGCCA‑AGGAG‑AGAGCGGAAGAGGACACAAATGTCCGCAAAAAAAACCGCCACTGGTGTCAGCTGCGGtgt > 1:792089/1‑148 (MQ=16) gcagcCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTg > 1:779288/1‑150 (MQ=255) ctgcGAAGCTGAAATCCCGGGGCCGCTTCGCGCccctttcgcgacacaaggccgctcccacaaaaaagcagaccttgcaggctttgggcgaggtgatttgacgccaccgcccccgctgggtataaaccgcctcttattgaattgtcaggc > 2:71934‑M2/1‑33 (MQ=255) gAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACg > 1:518369/1‑150 (MQ=255) gCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGtttt < 1:678340/123‑1 (MQ=255) gCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGtttt > 2:678340/1‑123 (MQ=255) cTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCAt < 2:518369/150‑1 (MQ=255) tGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATc > 2:619127/1‑150 (MQ=255) aTCCCGGGGCCGCTTCGCGCCCCTTTCGCGGCACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGa > 1:97133/1‑150 (MQ=255) tCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAACCAGGTTTTTGTTGTCAGCGGCGGTTTTGGGTATCGCAATGCCCTTAGAACGGCATCTTGaa > 1:978690/1‑150 (MQ=37) tCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGcc > 1:791006/1‑95 (MQ=255) tCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGcc < 2:791006/95‑1 (MQ=255) tCCAGGGGCCGCGTCGCGCCCCTTTCGCGACACAAGGCACCT‑TCTACATCAAGATTA‑ACAGCAACGCCTTTTAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGaa < 1:151289/150‑1 (MQ=255) ccGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGc > 1:1150959/1‑150 (MQ=255) gggCCGCTTCGCGACTCTTTCGCGACACAAGGCCGCT‑CACACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTAGCGCAATGCCCTTAGAACGGCATCTTGAAGCCcg < 2:469272/150‑1 (MQ=255) gCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCggcggc > 1:199824/1‑150 (MQ=255) ttCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGCCGGCat > 1:855883/1‑149 (MQ=255) | ACCCAGCGGGGGCGGTGGCGTCAAATCACCTCGCCCAAAGCCTGCAAGGTCTGCTTTTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCTGCGAAGCAGCCCCGGCACTCTGTGCTGCGAAGCTGAAATCCCGGGGCCGCTTCGCGCCCCTTTCGCGACACAAGGCCGCT‑CCCACAA‑AAAAGCAGACCGCAACTGGGTTGAAATCTCCGCAAAAAAAACCGCCACTGTTGTCAGCGGCGGTTTTGAGTATCGCAATGCCCTTAGAACGGCATCTTGAAGCCCGGCGGCAG > NC_002947/4852411‑4852700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |