New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5276126 =	44 (0.900)	3 (0.060)	3/238	NT	6.5%	coding (619/1437 nt)	cioA	cyanide insensitive ubiquinol oxidase subunit I
	?	NC_002947	5276148 =	44 (0.940)					coding (597/1437 nt)	cioA	cyanide insensitive ubiquinol oxidase subunit I

CAAGGTCACGAGATCATCGATGGTCGGGTGGTGCCGGTGGACTGGTTTGCGGTGGTGTTCAACCCCTCCTTCCCCTACCGCCTGATGCACATGGCTACTGCCGCGTTCGTGTCCACCGCGTTCTTCGTCGGTGCCTCGGCGGCCTGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5276276‑5276126 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaccGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGCACCACCCGACCATCGATGATCTCGTGACCTTGCGGGGTTTGCATC  >  NC_002947/5276148‑5276289                                                                                                                                                                                                                                                                                                       CAAGGTCACGAGATCATCGATGGTCGGGTGGTGCCGGTGGACTGGTTTGCGGTGGTGTTCAACCCCTCCTTCCCCTACCGCCTGATGCACATGGCTACTGCCGCGTTCGTGTCCACCGCGTTCTTCGTCGGTGCCTCGGCGGCCTGGCAC                                                                                                                                                 <  2:503086/150‑1                       GTCGGGTGGTGCCGGTGGACTGGTTTGCGGTGGTGTTCAACCCCTCCTTCCCCTACCGCCTGATGCACATGGCTACTGCCGCGTTCGTGTCCACCGCGTTCTTCGTCGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACAC                                                                                                                           <  2:163787/150‑1                                             GTTTGCGGTGGTGTTCAACCCCTCCTTCCCCTACCGCCTGATGCACATGGCTACTGCCGCGTTCGTGTCCACCGCGTTCTTCGTCGGTGCCTCGGCGGCCTGG                                                                                                                                                    <  1:354771/103‑1                                             GTTTGCGGTGGTGTTCAACCCCTCCTTCCCCTACCGCCTGATGCACATGGCTACTGCCGCGTTCGTGTCCACCGCGTTCTTCGTCGGTGCCTCGGCGGCCTGG                                                                                                                                                    >  2:354771/1‑103                                                                                                                                   GTGCCTCGGCGGCCTGGCACCGACGAAGAACGCGG                                                                                                                                  >  1:1283787/1‑35                                                                                                                                   GTGCCTCGGCGGCCTGGCACCGACGAAGAACGCGG                                                                                                                                  <  2:1283787/35‑1                                                                                                                                                CTGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGCACCACCCGACCATCGATGATCTCGTGACCTTGCGGGGTTTGCATC  <  1:163787/150‑1                                                                                                                                                                                                                                                                                                       CAAGGTCACGAGATCATCGATGGTCGGGTGGTGCCGGTGGACTGGTTTGCGGTGGTGTTCAACCCCTCCTTCCCCTACCGCCTGATGCACATGGCTACTGCCGCGTTCGTGTCCACCGCGTTCTTCGTCGGTGCCTCGGCGGCCTGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5276276‑5276126 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaccGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGCACCACCCGACCATCGATGATCTCGTGACCTTGCGGGGTTTGCATC  >  NC_002947/5276148‑5276289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.