New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5276126 =	44 (0.900)	3 (0.060)	3/238	NT	6.5%	coding (619/1437 nt)	cioA	cyanide insensitive ubiquinol oxidase subunit I
	?	NC_002947	5276148 =	44 (0.940)					coding (597/1437 nt)	cioA	cyanide insensitive ubiquinol oxidase subunit I

GCAATTTTCACCGGCTGGTGCTTGAGGGTATTGAGGCCGTGGAAATCGCCGATCACTGCCTGAATCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGCACCACCCGACCATCGATGATCTCGT  >  NC_002947/5275984‑5276269                                                                                                                                               |                                                                                                                                                gatgcaaaccccgcaaggtcacgagatcatcgatggtcgggtggtgccggtggactggtttgcggtggtgttcaacccctccttcccctaccgcctgatgcacatggctactgccgcgttcgtgtccaccgcgttcttcgtcGGTGCCAg                                                                                                                                          <  1:163787‑M1/8‑1 (MQ=255)   aaTTTTCACCGGCTGGTGCTTGAGGGTATTGAGGCCGTGGAAATCGCCGATCACTGCCTGAATCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGgc                                                                                                                                        <  1:121313/150‑1 (MQ=255)               cTGGTGCTTGAGGGTATTGAGGCCGTGGAAATCGCCGATCACTGCCTGAATCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCAcc                                                                                                                            <  1:877659/150‑1 (MQ=255)                        gAGGGTATTGAGGCCGTGGAAATCGCCGATCACTGCCTGAATCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACgaagaa                                                                                                                   <  1:272190/150‑1 (MQ=255)                        gAGGGTATTGAGGCCGTGGAAATCGCCGATCACTGCACCTAACTGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACgaagaa                                                                                                                   <  1:978136/150‑1 (MQ=255)                         aGGGTATTGAGGCCGTGGAAATCGCCGATCACTGCCTGAATCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAAc                                                                                                                  <  1:544982/150‑1 (MQ=255)                              aTTGAGGCCGTGGAAATCGCCGATCACTGCCTGAATCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGt                                                                                                             <  1:110192/150‑1 (MQ=255)                                    gCCGTGGAAATCGCCGATCACTGCCTGAATCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAg                                                                                                                                 <  1:121874/124‑1 (MQ=255)                                    gCCGTGGAAATCGCCGATCACTGCCTGAATCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAg                                                                                                                                 >  2:121874/1‑124 (MQ=255)                                          gAAATCGCCGATCACTGCCTGAATCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAAcgc                                                                                                 >  2:744874/1‑150 (MQ=255)                                                   gATCACTGCCTGAATCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGc                                                                                        <  1:744874/150‑1 (MQ=255)                                                        cTGCCTGAATCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCAtgt                                                                                   >  1:83523/1‑150 (MQ=255)                                                         tGCCTGAATCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAgg                                                                                                                                                <  1:209257/88‑1 (MQ=255)                                                         tGCCTGAATCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAgg                                                                                                                                                >  2:209257/1‑88 (MQ=255)                                                         tGCCTGAATCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCAtgtg                                                                                  >  2:1261857/1‑150 (MQ=255)                                                                 tCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTg                                                                                                            >  2:411651/1‑116 (MQ=255)                                                                 tCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTg                                                                                                            <  1:411651/116‑1 (MQ=255)                                                                   ggggCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCgg                                                                        <  2:957064/150‑1 (MQ=255)                                                                    gggCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGa                                                                                                          <  2:817753/115‑1 (MQ=255)                                                                    gggCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGa                                                                                                          >  1:817753/1‑115 (MQ=255)                                                                    gggCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGt                                                                       >  1:52930/1‑150 (MQ=255)                                                                      gagacgaTCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAg                                                                     >  1:1154017/3‑150 (MQ=255)                                                                        gacgaTCAATGCCATCCACATGACCATCGACAGCTGGTTGCGGACGGCCGGGTTGTCACGCCCGCACATCGGGTTTCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAggg                                                                   <  1:1186080/150‑1 (MQ=255)                                                                              cAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGGAGCCATGTGCATCAGGCGGTAGGGGAagga                                                             >  2:1264767/1‑150 (MQ=255)                                                                                   ccATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGt                                                        <  2:52930/150‑1 (MQ=255)                                                                                           aTGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAAcacc                                                >  1:900465/1‑150 (MQ=255)                                                                                              gCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGa                                                     <  2:143319/142‑1 (MQ=255)                                                                                              gCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGa                                                     >  1:143319/1‑142 (MQ=255)                                                                                                    gACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAAc                                       <  2:1154017/150‑1 (MQ=255)                                                                                                         cATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGac                                                                                                         <  2:184914/79‑1 (MQ=255)                                                                                                         cATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGac                                                                                                         >  1:184914/1‑79 (MQ=255)                                                                                                           tCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCa                                >  2:637795/1‑150 (MQ=255)                                                                                                             ttGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCAcc                              >  1:38307/1‑150 (MQ=255)                                                                                                                 gTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGca                          >  2:870208/1‑150 (MQ=255)                                                                                                                 gTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGca                          <  1:1261857/150‑1 (MQ=255)                                                                                                                  tACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACATGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGcac                         >  1:755359/1‑150 (MQ=255)                                                                                                                   aCAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGt                                                                                                             <  1:557915/65‑1 (MQ=255)                                                                                                                   aCAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGt                                                                                                             >  2:557915/1‑65 (MQ=255)                                                                                                                       ccGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGCACCAccc                    >  1:597528/1‑150 (MQ=255)                                                                                                                          gtgtccaccgcgttcttcgtcGGTGCCTCGGCGGCCTGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGCACCACCCGAc                 <  2:163787‑M1/129‑1 (MQ=255)                                                                                                                           gTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCTCATACCAGTCCACCGGCACCACCCGAcc                >  2:162562/1‑150 (MQ=255)                                                                                                                             tGTCACGCCCGCGCAGCAGGTGCCACCCCTTCTAGGCACCGACGCAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGCACCACCCGACCAt              <  1:325964/150‑1 (MQ=255)                                                                                                                              gTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGCACCACCCGACCATc             <  2:83523/150‑1 (MQ=255)                                                                                                                               tCACGCCCGCGCAGCAGGTTCCAGGCCGCCGAGGCACcga                                                                                                                          >  2:1072864/1‑40 (MQ=255)                                                                                                                               tCACGCCCGCGCAGCAGGTTCCAGGCCGCCGAGGCACcga                                                                                                                          <  1:1072864/40‑1 (MQ=255)                                                                                                                                 ccgcgttcttcgtcGGTGCCAGGCCGCCGAGGCAc                                                                                                                             <  2:1283787‑M1/21‑1 (MQ=255)                                                                                                                                 ccgcgttcttcgtcGGTGCCAGGCCGCCGAGGCAc                                                                                                                             >  1:1283787‑M1/15‑35 (MQ=255)                                                                                                                                     ccGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGCACCACCCGACCATCgatgat       <  2:491377/149‑1 (MQ=255)                                                                                                                                     ccGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGCACCACCCGACCATCgatgat       >  1:491377/1‑149 (MQ=255)                                                                                                                                         gcagcaGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGCACCACCCGACCATCGATGATCTCGt  >  2:709188/1‑150 (MQ=255)                                                                                                                                           agcagGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGc                           <  1:86246/123‑1 (MQ=255)                                                                                                                                           agcagGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGc                           >  2:86246/1‑123 (MQ=255)                                                                                                                                               |                                                                                                                                                GCAATTTTCACCGGCTGGTGCTTGAGGGTATTGAGGCCGTGGAAATCGCCGATCACTGCCTGAATCGGGGCGACGATCAATGCCATCCACATGGCCATCGACAGCATCTTGCGTACAGCCGGGTTGTCACGCCCGCGCAGCAGGTGCCAGGCCGCCGAGGCACCGACGAAGAACGCGGTGGACACGAACGCGGCAGTAGCCATGTGCATCAGGCGGTAGGGGAAGGAGGGGTTGAACACCACCGCAAACCAGTCCACCGGCACCACCCGACCATCGATGATCTCGT  >  NC_002947/5275984‑5276269

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.