| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5605337 | 59 (1.200) | 4 (0.080) | 4/240 | NT | 5.9% | coding (661/1419 nt) | PP_4926 | HlyD family secretion protein |
| ? | NC_002947 | = 5605372 | 70 (1.490) | coding (626/1419 nt) | PP_4926 | HlyD family secretion protein | |||||
GTCGATGCGCGAGCGCTGAAGTGCCAGTTCACGCTCCTGCTCCAGGCGGGCCTGCTCCTTTTCCAGGTAGGTGTGCTTGGCCACCGCCGATTCACTGAACAACAGCTTGTAATCCGCCGTCAGTTGGCGGGTGATCACCAACAGTTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5605188‑5605337‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgAAATCCGTTCCGCCCAGGGCCGGGCTGACGCGCTCCGGCAACTGTTGGTGATCACCCGCCAACTGACGGCGGATTACAAGCTGTTGTTCAGTGAATCGGCGGTGGCCAAGCACACCTACCTGGAAAAGGAGCAGGCCCGCCTGGAGC < NC_002947/5605372‑5605226 GTCGATGCGCGAGCGCTGAAGTGCCAGTTCACGCTCCTGCTCCAGGCGGGCCTGCTCCTTTTCCAGGTAGGTGTGCTTGGCCACCGCCGATTCACTGAACAACAGCTTGTAATCCGCCGTCAGTTGGCGGGTGATCACCAACAGTTGCCG < 2:58773/150‑1 TGAAGTGCCAGTTCACGCTCCTGCTCCAGGCGGGCCTGCTCCTTTTCCAGGTAGGTGTGCTTGGCCACCGCCGATTCACTGAACAACAGCTTGTAATCCGCCGTCAGTTGGCGGGTGATCACCAACAGTTGC < 1:1055156/132‑1 TGAAGTGCCAGTTCACGCTCCTGCTCCAGGCGGGCCTGCTCCTTTTCCAGGTAGGTGTGCTTGGCCACCGCCGATTCACTGAACAACAGCTTGTAATCCGCCGTCAGTTGGCGGGTGATCACCAACAGTTGC > 2:1055156/1‑132 GTTCACGCTCCTGCTCCAGGCGGGCCTGCTCCTTTTCCAGGTAGGTGTGCTTGGCCACCGCCGATTCACTGAACAACAGCTTGTAATCCGCCGTCAGTTGGCGGGTGATCACCAACAGTTGCCGAAATCCGTTCCGCCCAGGGCCGGGCT > 2:46231/1‑150 GGGCCTGCTCCTTTTCCAGGTAGGTGTGCTTGGCCACCGCCGATTCACTGAACAACAGCTTGTAATCCGCCGTCAGTTGGCGGGTGATCACCAACAGTTGCCGAAATCCGTTCCGCCCAGGGCCGGGCTGACGCGCTCCGGCAACTGTTG < 1:46231/150‑1 GTAGGTGTGCTTGGCCACCGCCGATTCACTGAACAACAGCTTGTAATCCGCCGTCAGTTGGCGGGTGATCACCAACAGTTGCCGAAATCCGTTCCGCCCAGGGCCGGGCTGACGCGCTCCGGCAACTGT > 1:544229/1‑129 GTAGGTGTGCTTGGCCACCGCCGATTCACTGAACAACAGCTTGTAATCCGCCGTCAGTTGGCGGGTGATCACCAACAGTTGCCGAAATCCGTTCCGCCCAGGGCCGGGCTGACGCGCTCCGGCAACTGT < 2:544229/129‑1 TGCCGAAATCCGTTCCGCCCAGGGCCGGGCTGACGCGCTCC > 1:523056/1‑41 TGCCGAAATCCGTTCCGCCCAGGGCCGGGCTGACGCGCTCC < 2:523056/41‑1 CCGAAATCCGTTCCGCCCAGGGCCGGGCTGACGCGCTCCGGCAACTGTTGGTGATCACCCGCCAACTGACGGCGGATTACAAGCTGTTGTTCAGTGAATCGGCGGTGGCCAAGCACACCTACCTGGAAAAGGAGCAGGCCCGCCTGGAGC > 2:987323/1‑150 GAAATCCGTTCCGCCCAGGGTCGGGCTGACGCGCTCCGGCAACTGTTGGTGATCACCCGCCAACTGACGGCGGATTACAAGCTGTT < 1:327485/86‑1 GAAATCCGTTCCGCCCAGGGTCGGGCTGACGCGCTCCGGCAACTGTTGGTGATCACCCGCCAACTGACGGCGGATTACAAGCTGTT > 2:327485/1‑86 GAAATCCGTTCCGCCCAGGGCCGGGCTGACGCGCTCCGGCAACTGTTGGTGATCACCCGCCAACTGACGGCGGATTACAAGCTGTTGTTCAGTGAATCGGCGGTGGCCAAGCACACCTACCTGGAAAAGGAGC > 1:40571/1‑133 GAAATCCGTTCCGCCCAGGGCCGGGCTGACGCGCTCCGGCAACTGTTGGTGATCACCCGCCAACTGACGGCGGATTACAAGCTGTTGTTCAGTGAATCGGCGGTGGCCAAGCACACCTACCTGGAAAAGGAGC < 2:40571/133‑1 GTCGATGCGCGAGCGCTGAAGTGCCAGTTCACGCTCCTGCTCCAGGCGGGCCTGCTCCTTTTCCAGGTAGGTGTGCTTGGCCACCGCCGATTCACTGAACAACAGCTTGTAATCCGCCGTCAGTTGGCGGGTGATCACCAACAGTTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5605188‑5605337‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgAAATCCGTTCCGCCCAGGGCCGGGCTGACGCGCTCCGGCAACTGTTGGTGATCACCCGCCAACTGACGGCGGATTACAAGCTGTTGTTCAGTGAATCGGCGGTGGCCAAGCACACCTACCTGGAAAAGGAGCAGGCCCGCCTGGAGC < NC_002947/5605372‑5605226 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |