New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 625064 | 27 (0.550) | 3 (0.070) | 5/232 | NT | 10.2% | intergenic (‑155/+28) | PP_0537/ppa | transcriptional regulator/inorganic pyrophosphatase |
? | NC_002947 | = 625068 | 28 (0.620) | intergenic (‑159/+24) | PP_0537/ppa | transcriptional regulator/inorganic pyrophosphatase |
CGAGTGTAGCGGCGGGTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCTTTGTAGTTGGCAAAGAAGTGCT > NC_002947/624915‑625213 | cgAGTGTAGCGGCGGGTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGC < 2:1162703‑M1/150‑1 (MQ=255) aGCGGCGGGTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcg < 1:230293‑M2/150‑4 (MQ=255) gcggcgGGTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcgg > 1:209222‑M2/1‑146 (MQ=255) gcggGTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcggggg < 2:537189‑M2/150‑8 (MQ=255) gggTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcggggttt > 1:791633‑M2/1‑141 (MQ=255) gTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAGAAACCCCGCtttggcggggttttt < 2:452002‑M1/150‑16 (MQ=255) cAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCa > 1:683400/1‑150 (MQ=255) cAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCa > 2:597522/1‑150 (MQ=255) aGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcgg < 1:563578‑M2/137‑5 (MQ=255) aGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcgg > 2:563578‑M2/1‑133 (MQ=255) aGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCa > 2:153777/1‑149 (MQ=255) aGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCa < 1:153777/149‑1 (MQ=255) aGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCAAGCAGTGAGCGCGTTCCATTTAGGCATGAAAAACCCCGCAAAAGCGGGGTTTCCCTgaaa > 2:552841/1‑147 (MQ=255) aaTGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATc > 2:7584/1‑150 (MQ=255) aTGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCa < 1:417119/150‑1 (MQ=255) ggTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGt < 2:473811/150‑1 (MQ=255) tgtTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAg < 1:7584/150‑1 (MQ=255) aCGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGc < 2:683400/150‑1 (MQ=255) gTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGAttt < 1:552841/150‑1 (MQ=255) tACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCTTTGgcggggtttttcatgcctgaa < 2:853737‑M2/120‑22 (MQ=255) tACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCTTTGgcggggtttttcatgcctgaa > 1:853737‑M2/1‑99 (MQ=255) tACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTg < 2:992228/150‑1 (MQ=255) gCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcggg > 1:659071‑M2/1‑88 (MQ=255) gCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAgcggg < 2:659071‑M2/93‑6 (MQ=255) tGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGggc < 2:355483/150‑1 (MQ=255) ggTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGgcgc < 2:439492/150‑1 (MQ=255) gtAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGAGTTCCATTCAGTCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCtt > 2:567650/1‑150 (MQ=255) gACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCTTTGgcggggtttttcat > 1:1080477‑M2/1‑64 (MQ=255) gACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCTTTGgcggggtttttcat < 2:1080477‑M2/78‑15 (MQ=255) gACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCa < 1:901210/150‑1 (MQ=255) tAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCg > 2:88398/1‑150 (MQ=255) tAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTAGGTA‑CGGCCACCTTTATGGTGCGACCGATTTGGTGCTAGCGCGGCGGTCGGCGTCGTCTCCTTCCCAGCCTTCg > 1:23265/1‑150 (MQ=255) ggATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGAt > 2:3038/1‑150 (MQ=255) gATTTGTTCCCAGCAGTGCGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGCAAGCAGCTACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATc > 2:494916/1‑150 (MQ=255) gATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATc < 2:230293/150‑1 (MQ=255) aGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTTGCCAGGCTTG‑CGTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTtc > 2:1138351/1‑150 (MQ=255) gTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCgag > 2:1207166/1‑150 (MQ=255) ttCAGGCATGAAAAACCCCGCcaaagcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgta > 1:853737‑M1/1‑21 (MQ=255) ttCAGGCATGAAAAACCCCGCcaaagcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgta < 2:853737‑M1/120‑100 (MQ=255) ttCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGGAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCttt < 2:23265/150‑1 (MQ=255) gCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCttt > 2:1143985/1‑145 (MQ=255) gCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCttt < 1:1143985/145‑1 (MQ=255) aTGAAAAACCCCGCcaaagcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtc > 1:1080477‑M1/1‑14 (MQ=255) aTGAAAAACCCCGCcaaagcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtc < 2:1080477‑M1/78‑65 (MQ=255) aaaaaCCCCGCCAAAgcggggtttctcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgtacaaatcccgtcaacacccggttcatttccttactggcaac < 2:452002‑M2/150‑136 (MQ=255) aaaCCCCGCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgtacaaatcccgtcaacacccggttcatttccttactggcaaccc > 1:791633‑M1/1‑9 (MQ=255) cccccgCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgtacaaatcccgtcaacacccggttcatttccttactggcaacccgc < 2:537189‑M1/149‑144 (MQ=255) aCCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCTTTGTAGTTGGCAaaga > 2:1056900/1‑150 (MQ=255) cccGCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagc > 1:659071‑M1/1‑5 (MQ=255) cccGCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagc < 2:659071‑M1/93‑89 (MQ=255) cccGCCAAAGCGGGGTTTCCCTGCAGTNGAAATCAGCC‑CTNGTAGGCNGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCTTTGTAGTTGGCAaagaag > 1:750673/1‑150 (MQ=255) cccGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCTTTGTAGTTGGCAaagaag > 1:1277175/1‑150 (MQ=255) ccGCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgtacaaatcccgtcaacacccggttcatttccttactggcaacccgccgc > 1:209222‑M1/1‑4 (MQ=255) ccGCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgtacaaatcccgtcaacacccggttcatttccttact > 2:563578‑M1/1‑4 (MQ=255) ccGCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgtacaaatcccgtcaacacccggttcatttccttact < 1:563578‑M1/137‑134 (MQ=255) cGCtttggcggggtttttcatgcctgaatggaacgcgctcactgctgggaacaaatcctacacagtcctacaccagcatcctacaaacagcctcttttcgtacaaatcccgtcaacacccggttcatttccttactggcaacccgccgct < 1:230293‑M1/150‑148 (MQ=255) ccAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCTTTGTAGTTGGCAAAGAAGTGCt < 1:1238925/150‑1 (MQ=255) | CGAGTGTAGCGGCGGGTTGCCAGTAAGGAAATGAACCGGGTGTTGACGGGATTTGTACGAAAAGAGGCTGTTTGTAGGATGCTGGTGTAGGACTGTGTAGGATTTGTTCCCAGCAGTGAGCGCGTTCCATTCAGGCATGAAAAACCCCGCCAAAGCGGGGTTTCCCTGCAGTCGAAATCAGCC‑CTTGTAGGCAGCGACCGATTTGGTGATCGCGGCACGGGCGGCGTCGGCGCCTTCCCAGCCTTCGATCTTGACCCACTTGCCCTTCTCGAGATCTTTGTAGTTGGCAAAGAAGTGCT > NC_002947/624915‑625213 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |