| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2661073 = | 44 (0.900) | 3 (0.060) | 3/244 | NT | 6.4% | intergenic (‑153/‑154) | PP_2332/PP_2333 | hypothetical protein/GntR family transcriptional regulator |
| ? | NC_002947 | 2661095 = | 45 (0.940) | intergenic (‑175/‑132) | PP_2332/PP_2333 | hypothetical protein/GntR family transcriptional regulator | |||||
TGCATTGCAAGGTTCTAGGCAAGGTTCAGGTCAAGGTGACTGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGTTTTAAAAGGTGT > NC_002947/2660934‑2661219 | tGCATTGCAAGGTTCTAGGCAAGGTTCAGGTCAAGGTGACTGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCt < 2:215167/150‑1 (MQ=255) aGGCAAGGTTCAGGTCAAGGTGACTGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGcc > 1:896615/1‑127 (MQ=255) aGGCAAGGTTCAGGTCAAGGTGACTGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGcc < 2:896615/127‑1 (MQ=255) aaGGTTCAGGTCAAGGTGACTGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGAt > 1:904160/1‑150 (MQ=255) tCAAGGTGACTGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTgc > 2:408293/1‑135 (MQ=255) tCAAGGTGACTGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTgc < 1:408293/135‑1 (MQ=255) cTGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAgttgt < 2:904160/150‑1 (MQ=255) tGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTTAAgtggtg < 2:438257/150‑1 (MQ=255) ggCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGa < 1:641700/150‑1 (MQ=255) gCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGtt > 2:603458/1‑139 (MQ=255) gCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGtt < 1:603458/139‑1 (MQ=255) aaTTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAg > 1:996374/1‑150 (MQ=255) cTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTcgc < 1:752054/150‑1 (MQ=255) cTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTcgc > 1:1160328/1‑150 (MQ=255) cgcAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCa > 1:1273626/1‑106 (MQ=255) cgcAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCa < 2:1273626/106‑1 (MQ=255) aaGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGa > 2:1216050/1‑136 (MQ=255) aaGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGa < 1:1216050/136‑1 (MQ=255) aaGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAg > 1:153415/1‑150 (MQ=255) ccTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAgtg < 2:756640/126‑1 (MQ=255) ccTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAgtg > 1:756640/1‑126 (MQ=255) gTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAgtgg < 2:83746/123‑1 (MQ=255) gTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAgtgg > 1:83746/1‑123 (MQ=255) gTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGtt < 2:1070781/150‑1 (MQ=255) gCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTc > 2:1246860/1‑133 (MQ=255) gCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTc < 1:1246860/133‑1 (MQ=255) gCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGt > 2:372378/1‑150 (MQ=255) aCGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCt > 1:112861/1‑150 (MQ=255) aCGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCt > 2:184827/1‑150 (MQ=255) aCGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCt < 2:153415/150‑1 (MQ=255) acagacagGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAg > 2:522052/1‑150 (MQ=255) ggCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGt > 1:1044528/1‑150 (MQ=255) gCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAgg > 1:221974/1‑143 (MQ=255) gCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAgg < 2:221974/143‑1 (MQ=255) aTCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCg < 2:1160328/150‑1 (MQ=255) aTACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAg > 1:211860/1‑150 (MQ=255) tACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGt > 2:535550/1‑150 (MQ=255) accacttcaacgctgtcagatcgcgcacCGCTGGCGTCAAGACGTCGGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGTCTTGCAGGTCTTGTTTCGCTAGtt < 2:1202624‑M1/122‑1 (MQ=255) ccccATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGttt < 1:372378/150‑1 (MQ=255) cccATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCAtt > 2:361363/1‑114 (MQ=255) cccATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCAtt < 1:361363/114‑1 (MQ=255) aacgctgtcagatcgcgcacCGCTGGCGTCAAGACGTCGGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTc > 1:650723‑M1/21‑105 (MQ=255) aacgctgtcagatcgcgcacCGCTGGCGTCAAGACGTCGGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTc < 2:650723‑M1/85‑1 (MQ=255) gAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCaa < 2:112861/150‑1 (MQ=255) gcgcGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAagag > 1:803101/1‑150 (MQ=255) gcgGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGtt > 1:299569/1‑150 (MQ=255) atctaTTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGGCCAAGAGttt < 2:348911/146‑1 (MQ=255) ggCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGtttt < 2:803101/150‑1 (MQ=255) tCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGTTTTAAAAg < 2:211860/150‑1 (MQ=255) tCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGTTTTAAAAGgtgt < 2:299569/150‑1 (MQ=255) | TGCATTGCAAGGTTCTAGGCAAGGTTCAGGTCAAGGTGACTGGCAATTACTGCGCAAGCTTCCTCGTTTATCTGTCAACAGGCACGAATGCATGACAGACAGGCTATCCATACCCCATCGGAGGCGCGGCATTCTATCACGCCGACGTCTTGACGCCAGCGGTGCGCGATCTGACAGCGTTGAAGTGGTGATAGTTCGCGATTAGACGATTGTCGACAATGTTCATTTTGTCTTTGACTTGCAGGTCTTGTTTCGCTAGTTTCTGACCAAGAGTTTTAAAAGGTGT > NC_002947/2660934‑2661219 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |