New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3811617 =	38 (0.770)	6 (0.140)	5/224	NT	16.9%	intergenic (‑165/‑103)	PP_3367/PP_3368	hypothetical protein/MFS transporter
	?	NC_002947	3811664 =	25 (0.570)					intergenic (‑212/‑56)	PP_3367/PP_3368	hypothetical protein/MFS transporter

GAACCGAATGTGTGGCGCGTGTACTCACCGTTTGCCGAGCGTTGGCGCGTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGT  >  NC_002947/3811468‑3811763                                                                                                                                                      |                                                                                                                                                   gAACCGAATGTGTGGCGCGTGTACTCACCGTTTGCCGAGCGTTGGCGCGTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACgg                                                                                                                                                    <  1:742145/150‑1 (MQ=255)    gccgatggcaaagctgcccagtgccatggcggcttccatcttggcgacggtgtttttactggggagcggggggtgttcctggactgacatctgtatccctattgaaacatgctgaaacgttcaaggcgggataatagtcaatcgatGGCt                                                                                                                                                 >  2:401815‑M1/147‑150 (MQ=255)      cgatggcaaagctgcccagtgccatggcggcttccatcttggcgacggtgtttttactggggagcggggggtgttcctggactgacatctgtatccctattgaaacatgctgaaacgttcaaggcgggataatagtcaatcgatGGCTGc                                                                                                                                               <  1:1092836‑M1/6‑1 (MQ=255)                   gtgtACTCACCGTTGGCCGAGCGTTGGCGCGTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAg                                                                                                                                  >  2:49618/1‑150 (MQ=255)                         tCACCGTTTGCCGAGCGTTGGCGCGTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCgggg                                                                                                                            >  2:767680/1‑150 (MQ=255)                              gTTTGCCGAGCGTTGGCGCGTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGgcagca                                                                                                                       <  1:49618/150‑1 (MQ=255)                                   ccGAGCGTTGGCGCGTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCAACCTc                                                                                                                  >  1:1050487/1‑150 (MQ=255)                                    cGAGCGTTGGCGCGTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATc                                                                                                                     <  2:885798/146‑1 (MQ=255)                                    cGAGCGTTGGCGCGTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATc                                                                                                                     <  2:885690/146‑1 (MQ=255)                                    cGAGCGTTGGCGCGTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATc                                                                                                                     >  1:885798/1‑146 (MQ=255)                                    cGAGCGTTGGCGCGTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATc                                                                                                                     >  1:885690/1‑146 (MQ=255)                                     gAGCGTTGGCGCGTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCGCGTACTGAGCCGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCGGCATCCTCGa                                                                                                                >  1:649438/1‑150 (MQ=255)                                     gAGCGTTGGCGCGTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTcgc                                                                                                                                       <  2:282913/127‑1 (MQ=255)                                     gAGCGTTGGCGCGTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGAcgc                                                                                                                                       >  1:282913/1‑127 (MQ=255)                                     gAGCGTTGACACGTCACCGCCCGCAGTCTAAAAGAGCAGGCATACCCGCTGCCACAGCATAACGTCACGTAAGACAGGAGTGTAGCAAGTACGCTCGTAATGACCAGGACACGGGCGGCAACGACGCTGATGCCGGTGCAGCTTcccgga                                                                                                                <  2:381203/150‑5 (MQ=255)                                            ggCGCGTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCa                                                                                                         <  1:521213/150‑1 (MQ=255)                                                       gcccgcAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTg                                                                                              >  1:133054/1‑150 (MQ=255)                                                          cgcAGTCTAAAAGAGCATGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGTGGCAGCATCCTCGACGTTGCAGCCATCGATTGACt                                                                                           <  2:457502/150‑1 (MQ=255)                                                           ccacgcTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACta                                                                                          <  1:18395/145‑1 (MQ=255)                                                                          cggcggccccGCTGCCATAGGATCCGGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGaa                                                                           <  2:73086/143‑1 (MQ=255)                                                                            gtgttcctggactgacatctgtatccctattgaaacatgctgaaacgttcaaggcgggataatagtcaatcgatGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTc                                                                                                                  <  1:767073‑M1/35‑1 (MQ=255)                                                                            gtgttcctggactgacatctgtatccctattgaaacatgctgaaacgttcaaggcgggataatagtcaatcgatGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTc                                                                                                                  >  2:767073‑M1/75‑109 (MQ=255)                                                                                  ctggactgacatctgtatccctattgaaacatgctgaaacgttcaaggcgggataatagtcaatcgatGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTc                                                                                                                  <  2:875528‑M1/35‑1 (MQ=255)                                                                                  ctggactgacatctgtatccctattgaaacatgctgaaacgttcaaggcgggataatagtcaatcgatGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTc                                                                                                                  >  1:875528‑M1/69‑103 (MQ=255)                                                                                  ccGCTGCCATAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGATGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAg                                                                   >  2:691340/1‑150 (MQ=255)                                                                                  ccGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAg                                                                   >  1:1128802/1‑150 (MQ=255)                                                                                     cTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGATGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCAt                                                                <  1:691340/150‑1 (MQ=255)                                                                                     cTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCAt                                                                <  2:1050487/150‑1 (MQ=255)                                                                                        ccACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTc                                                                                                                  >  1:111038/1‑97 (MQ=255)                                                                                        ccACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTc                                                                                                                  <  2:111038/97‑1 (MQ=255)                                                                                          acaGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCgg                                                                                                                              <  2:53738/83‑1 (MQ=255)                                                                                          acaGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCgg                                                                                                                              >  1:53738/1‑83 (MQ=255)                                                                                          acaGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTc                                                           >  2:1077084/1‑150 (MQ=255)                                                                                                  ccGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCgggg                                                                                                                            >  1:1049047/1‑77 (MQ=255)                                                                                                  ccGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCgggg                                                                                                                            <  2:1049047/77‑1 (MQ=255)                                                                                                   cGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGAt                                                  <  1:767680/150‑1 (MQ=255)                                                                                                         ttCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGAt                                            >  1:415578/1‑150 (MQ=255)                                                                                                             gCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGCCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCCATTTACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCa                                        <  2:62327/150‑1 (MQ=255)                                                                                                                   ggCGTAGCAAGCGCGCCCGTACGGCGCAGGAAACGGGCTGCAGCGTCGCGGAAGCCGGGTCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATACCGCCTTGAACTTTTCAGCATGTTTCAATAGGGATACTGATGCCAGTCCAg                                  <  2:78247/150‑1 (MQ=255)                                                                                                                    tgaaacgttcaaggcgggataatagtcaatcgatGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAg                                       <  2:631489‑M1/110‑1 (MQ=255)                                                                                                                    tgaaacgttcaaggcgggataatagtcaatcgatGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAg                                       >  1:631489‑M1/35‑144 (MQ=255)                                                                                                                        aGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAaca                             <  2:1128802/150‑1 (MQ=255)                                                                                                                             gcgagcCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGAGGCCGGGTGCGCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGGTTCAATAGGGATACAGATGTCAGTCCAGGAACAccccc                        >  1:732348/1‑150 (MQ=255)                                                                                                                                      tACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCa               <  2:133054/150‑1 (MQ=255)                                                                                                                                      tACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCa               <  1:1077084/150‑1 (MQ=255)                                                                                                                                          gAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTaa           <  2:415578/150‑1 (MQ=255)                                                                                                                                              aGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAac       >  2:1092836/1‑150 (MQ=255)                                                                                                                                                   acGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTATCGGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGt  >  1:1185159/1‑150 (MQ=255)                                                                                                                                                     gggCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAg              >  2:159111/1‑136 (MQ=255)                                                                                                                                                     gggCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAg              <  1:159111/136‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GAACCGAATGTGTGGCGCGTGTACTCACCGTTTGCCGAGCGTTGGCGCGTCACCGCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGT  >  NC_002947/3811468‑3811763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.