New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3811617 =	38 (0.770)	6 (0.140)	5/224	NT	16.9%	intergenic (‑165/‑103)	PP_3367/PP_3368	hypothetical protein/MFS transporter
	?	NC_002947	3811664 =	25 (0.570)					intergenic (‑212/‑56)	PP_3367/PP_3368	hypothetical protein/MFS transporter

GCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCTTTGCCATCGGC  >  NC_002947/3811522‑3811809                                                                                                                                               |                                                                                                                                                  gcccgcAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTg                                                                                                                                            >  1:133054/1‑150 (MQ=255)    cgcAGTCTAAAAGAGCATGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGTGGCAGCATCCTCGACGTTGCAGCCATCGATTGACt                                                                                                                                         <  2:457502/150‑1 (MQ=255)     ccacgcTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACta                                                                                                                                        <  1:18395/145‑1 (MQ=255)                    cggcggccccGCTGCCATAGGATCCGGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGaa                                                                                                                         <  2:73086/143‑1 (MQ=255)                            ccGCTGCCATAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGATGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAg                                                                                                                 >  2:691340/1‑150 (MQ=255)                            ccGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAg                                                                                                                 >  1:1128802/1‑150 (MQ=255)                               cTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGATGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCAt                                                                                                              <  1:691340/150‑1 (MQ=255)                               cTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCAt                                                                                                              <  2:1050487/150‑1 (MQ=255)                                 ctgacatctgtatccctattgaaacatgctgaaacgttcaaggcgggataatagtcaatcgatggctgcaacgtcgcggaagccggggcagcatcctcgacgttgcagccATCGATTGACTATTATCCCGCCTTGAACGTTTCa                                                                                                                  <  2:631489‑M2/34‑1 (MQ=255)                                 ctgacatctgtatccctattgaaacatgctgaaacgttcaaggcgggataatagtcaatcgatggctgcaacgtcgcggaagccggggcagcatcctcgacgttgcagccATCGATTGACTATTATCCCGCCTTGAACGTTTCa                                                                                                                  >  1:631489‑M2/111‑144 (MQ=255)                                    acaGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTc                                                                                                         >  2:1077084/1‑150 (MQ=255)                                             cGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGAt                                                                                                <  1:767680/150‑1 (MQ=255)                                                   ttCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGAt                                                                                          >  1:415578/1‑150 (MQ=255)                                                       gCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGCCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCCATTTACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCa                                                                                      <  2:62327/150‑1 (MQ=255)                                                             ggCGTAGCAAGCGCGCCCGTACGGCGCAGGAAACGGGCTGCAGCGTCGCGGAAGCCGGGTCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATACCGCCTTGAACTTTTCAGCATGTTTCAATAGGGATACTGATGCCAGTCCAg                                                                                <  2:78247/150‑1 (MQ=255)                                                              tgaaacgttcaaggcgggataatagtcaatcgatGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAg                                                                                     >  1:631489‑M1/35‑144 (MQ=255)                                                              tgaaacgttcaaggcgggataatagtcaatcgatGGCTGCAACGTCGAGGATGCTGCCCCGGCTTCCGCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAg                                                                                     <  2:631489‑M1/110‑1 (MQ=255)                                                                  aGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAaca                                                                           <  2:1128802/150‑1 (MQ=255)                                                                       gcgagcCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGAGGCCGGGTGCGCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGGTTCAATAGGGATACAGATGTCAGTCCAGGAACAccccc                                                                      >  1:732348/1‑150 (MQ=255)                                                                                tACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCa                                                             <  1:1077084/150‑1 (MQ=255)                                                                                tACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCa                                                             <  2:133054/150‑1 (MQ=255)                                                                                    gAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTaa                                                         <  2:415578/150‑1 (MQ=255)                                                                                        aGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAac                                                     >  2:1092836/1‑150 (MQ=255)                                                                                             acGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTATCGGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGt                                                >  1:1185159/1‑150 (MQ=255)                                                                                               gggCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAg                                                            <  1:159111/136‑1 (MQ=255)                                                                                               gggCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAg                                                            >  2:159111/1‑136 (MQ=255)                                                                                                 GCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGcc                                            <  1:76374‑M1/150‑1 (MQ=255)                                                                                                  CTGCAACGTCGCGGAAGCCGGGCCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCa                                           <  2:423125‑M1/150‑1 (MQ=255)                                                                                                  CTGCAACGTCGCGGAAGCCGGGCCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCa                                           <  2:423093‑M1/150‑1 (MQ=255)                                                                                                   TGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAg                                                                                >  2:470329‑M1/1‑112 (MQ=255)                                                                                                   TGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAg                                                                                <  1:470329‑M1/112‑1 (MQ=255)                                                                                                    GCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAg                                         <  1:723598‑M1/150‑1 (MQ=255)                                                                                                     CAACGTCGCGGAAGCCGGAGCAGCATCCTCGACGTTGCAGCCATGGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATAAAGATGTCCGTCCAGGCCCACCCCACGACCCCCAGTAAAAACACCGTCGCCAAGa                                        >  2:1042633‑M1/1‑150 (MQ=255)                                                                                                      AACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCTGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACCGAGGCCTGGCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGAt                                       <  1:1042633‑M1/150‑1 (MQ=255)                                                                                                         GTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGa                                                                                                 <  1:1111386‑M1/89‑1 (MQ=255)                                                                                                         GTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGa                                                                                                 >  2:1111386‑M1/1‑89 (MQ=255)                                                                                                          TCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGaa                                   >  2:76374‑M1/1‑150 (MQ=255)                                                                                                            gaggatgctgccccggcttccgcgacgttgcagccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAg                                                                                <  2:875528‑M2/68‑1 (MQ=255)                                                                                                            gaggatgctgccccggcttccgcgacgttgcagccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAg                                                                                >  1:875528‑M2/36‑103 (MQ=255)                                                                                                            gaggatgctgccccggcttccgcgacgttgcagccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAacac                                                                          <  1:767073‑M2/74‑1 (MQ=255)                                                                                                            gaggatgctgccccggcttccgcgacgttgcagccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAacac                                                                          >  2:767073‑M2/36‑109 (MQ=255)                                                                                                            GCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTcc                                                                                  >  2:1031705‑M1/1‑101 (MQ=255)                                                                                                            GCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTcc                                                                                  <  1:1031705‑M1/101‑1 (MQ=255)                                                                                                                   ccGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATg                          >  2:285728/1‑150 (MQ=255)                                                                                                                      gggCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCa                       >  2:437067/1‑150 (MQ=255)                                                                                                                            caTCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGc                 >  1:829942/1‑150 (MQ=255)                                                                                                                             aTCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCa                >  1:980457/1‑150 (MQ=255)                                                                                                                                cTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAg                                                                                <  1:745671/83‑1 (MQ=255)                                                                                                                                cTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAg                                                                                >  2:745671/1‑83 (MQ=255)                                                                                                                                cTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCt             >  1:1093751/1‑150 (MQ=255)                                                                                                                                cTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCt             >  2:1080372/1‑150 (MQ=255)                                                                                                                                 tCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGACCCACGCATGGCACTGGGCAGCtt            >  1:66173/1‑150 (MQ=255)                                                                                                                                 tCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCtt            >  2:170352/1‑150 (MQ=255)                                                                                                                                         gcagccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCTTTGCCATCg    <  1:1092836‑M2/144‑1 (MQ=255)                                                                                                                                           agccATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCTTTGCCATCGGc  >  2:401815‑M2/5‑150 (MQ=255)                                                                                                                                               |                                                                                                                                                  GCCCGCAGTCTAAAAGAGCAGGCGTACCCGCTGCCACAGGATCCCGTCACTTCAGCCAGGGGCGTAGCAAGCGCGCCCGTACTGAGCAGGACACGGGCTGCAACGTCGCGGAAGCCGGGGCAGCATCCTCGACGTTGCAGCCATCGATTGACTATTATCCCGCCTTGAACGTTTCAGCATGTTTCAATAGGGATACAGATGTCAGTCCAGGAACACCCCCCGCTCCCCAGTAAAAACACCGTCGCCAAGATGGAAGCCGCCATGGCACTGGGCAGCTTTGCCATCGGC  >  NC_002947/3811522‑3811809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.