New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3966277	43 (0.880)	3 (0.070)	3/234	NT	5.8%	coding (426/2001 nt)	ydcP	peptidase
	?	NC_002947	= 3966297	58 (1.260)					coding (446/2001 nt)	ydcP	peptidase

ATCGTGCAGGACCTTGGGGTGATGGAGCTGGACATCCCGCCAATCGAGCTGCATGCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACATTTCCCATGCGCAGACCGGCCGCAGCGCCAACCGTGGTGA  >  NC_002947/3966140‑3966423                                                                                                                                          |                                                                                                                                                   aTCGTGCAGGACCTTGGGGTGATGGAGCTGGACATCCCGCCAATCGAGCTGCATGCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTg                                                                                                                                        <  2:972824/150‑1 (MQ=255)        aGGACCTTGGGGTGATGGAGCTGGACATCCCGCCAATCGAGCTGCATGCCAGCACCCAGACCGACATCCTCACCCTGGAACGGGCCAAGTTCCTCGACCAGGGCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCaaa                                                                                                                                 <  2:500437/150‑1 (MQ=255)             cTTGGGGTGATGGAGCTGGACATCCCGCCAATCGAGCTGCATGCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCTGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATccgc                                                                                                                            <  1:215638‑M2/150‑5 (MQ=255)                             tGGACATCCCGCCAATCGAGCTGCATGCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGaaa                                                                                                            >  1:490431/1‑150 (MQ=255)                                    cccGCCAATCGAGCTGCATGCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGatttgctgcaggttcagctcccgcgccagtaccagttgcgagaaccc                                                                                                     <  1:756919‑M1/150‑48 (MQ=255)                                     ccGCCAATCGAGCTGCATGCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATgcc                                                                                                    <  1:853017/150‑1 (MQ=255)                                      cGCCAATCGAGCTGCATGCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATgccg                                                                                                   >  1:148145/1‑150 (MQ=255)                                      cGCCAATCGAGCTGCATGCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATgccg                                                                                                   >  1:873307/1‑150 (MQ=255)                                            tCGAGCTGCATGCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCg                                                                                             >  2:1200206/1‑150 (MQ=255)                                               aGCTGCATGCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGt                                                                                          >  1:417551/1‑150 (MQ=255)                                                  tGCATGCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGACACCGATGCCGCCATCGAGttct                                                                                       >  1:215839/1‑150 (MQ=255)                                                       gCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCTGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATc                                                                                  <  2:215638/150‑1 (MQ=255)                                                           gCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACg                                                                              >  1:577912/1‑150 (MQ=255)                                                               ccAGGCCGACATCCGCACCCTGGAACGGGCGGAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGCACCTGCCACAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCTATCGAGTTCTGCATCAACGgcgc                                                                          >  2:38391/1‑150 (MQ=255)                                                               ccAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGgcgc                                                                          >  1:1100838/1‑150 (MQ=255)                                                                     cGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCtgtg                                                                    >  2:930093/1‑150 (MQ=255)                                                                          tCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTgg                                                               <  1:1200206/150‑1 (MQ=255)                                                                             gCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGGACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGt                                                            >  1:673535/1‑150 (MQ=255)                                                                              cACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGtt                                                           <  2:577912/150‑1 (MQ=255)                                                                               aCCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTtc                                                          >  1:42787/1‑150 (MQ=255)                                                                                  cTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTctct                                                       <  1:785635/150‑1 (MQ=255)                                                                                   tGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTg                                                      <  2:58334/150‑1 (MQ=255)                                                                                   tGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTg                                                      <  2:148145/150‑1 (MQ=255)                                                                                   tGGAACGGGCCAAGTTCCTCGACCAGGCCGGGGTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTg                                                      >  1:722118/1‑150 (MQ=255)                                                                                    ggAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTgg                                                     <  2:873307/150‑1 (MQ=255)                                                                                    ggAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTgg                                                     <  2:417551/150‑1 (MQ=255)                                                                                     gAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGc                                                    <  1:930093/150‑1 (MQ=255)                                                                                      aaCGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGcc                                                   >  1:1010974/1‑150 (MQ=255)                                                                                        cGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCaa                                                 <  1:855524/150‑1 (MQ=255)                                                                                            ccAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCa                                             >  2:395667/1‑150 (MQ=255)                                                                                             cAAGTTCCTCGACCAGGCCGGGTTCCCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGGGTGGCGTTCTCTGGCCACTGCaa                                            <  1:38391/150‑1 (MQ=255)                                                                                              aaGTTCCTCGACCAGACCGGGTTCTCGCAACTGGTACTGACGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAAc                                           >  2:147929/1‑150 (MQ=255)                                                                                                 ttCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCAAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACAtt                                        >  1:226927/1‑150 (MQ=255)                                                                                                     tCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACATTTccc                                    >  2:539455/1‑150 (MQ=255)                                                                                                       gACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACATTTCCCAt                                  <  1:395667/150‑1 (MQ=255)                                                                                                        aCCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGatttgctgcaggttcagctcccgcgcca                                                                                                                        >  2:834597‑M1/1‑35 (MQ=255)                                                                                                        aCCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGatttgctgcaggttcagctcccgcgcca                                                                                                                        <  1:834597‑M1/63‑29 (MQ=255)                                                                                                               cGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTg                                                                >  1:906852/1‑112 (MQ=255)                                                                                                               cGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTg                                                                <  2:906852/112‑1 (MQ=255)                                                                                                                gggTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATccgcgccagtaccagttgcgagaacccggcctggtcgaggaacttggcccgttccagggtgcggatgtcggtctgggtgctggcatgcagctcgattggcggg                         <  1:756919‑M2/150‑104 (MQ=255)                                                                                                                      tcGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACATTTc                                      <  1:54242/131‑1 (MQ=255)                                                                                                                      tcGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACATTTc                                      >  2:54242/1‑131 (MQ=255)                                                                                                                          aaCTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACATTTCCCATGCGCAGACCGGCCGCAgcg               >  1:448558/1‑150 (MQ=255)                                                                                                                               gTACTGGCGCGGGAGCTGAACCTGAACGAATTCGGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACATTTCCCATGCGCAGACCGGCCGCAGCGCCAAc          >  1:358438/1‑150 (MQ=255)                                                                                                                                  cTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACATTTCCCATGCGCAGa                           <  2:189091/130‑1 (MQ=255)                                                                                                                                  cTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACATTTCCCATGCGCAGa                           >  1:189091/1‑130 (MQ=255)                                                                                                                                   tGGCGCGGGAGCTGAACCTGCAGCAAATccgcgccagtaccagttgcgagaacccggcctggt                                                                                             >  2:834597‑M2/1‑28 (MQ=255)                                                                                                                                   tGGCGCGGGAGCTGAACCTGCAGCAAATccgcgccagtaccagttgcgagaacccggcctggt                                                                                             <  1:834597‑M2/63‑36 (MQ=255)                                                                                                                                   tGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATGGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTTGCCAATGCAACATTTccc                                    >  1:1041697/1‑120 (MQ=255)                                                                                                                                   tGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACATTTccc                                    <  2:1041697/120‑1 (MQ=255)                                                                                                                                       gcgGatttgctgcaggttcagctcccgcgccagtaccagttgcgagaaccaggcctggtcgaggaacttggcccgttccagggtgcggatgtcggtctgggtgctggcatgcagctcgattggcgggatgtccagctccatcaccccaag  <  1:215638‑M1/150‑147 (MQ=255)                                                                                                                                          ggAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACATTTCCCAt                                  <  2:630420/115‑1 (MQ=255)                                                                                                                                          ggAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACATTTCCCAt                                  >  1:630420/1‑115 (MQ=255)                                                                                                                                          ggAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACATTTCCCATGCGCAGACCGGCCGCAgcgc              >  2:589440/1‑135 (MQ=255)                                                                                                                                          ggAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACATTTCCCATGCGCAGACCGGCCGCAgcgc              <  1:589440/135‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                   ATCGTGCAGGACCTTGGGGTGATGGAGCTGGACATCCCGCCAATCGAGCTGCATGCCAGCACCCAGACCGACATCCGCACCCTGGAACGGGCCAAGTTCCTCGACCAGGCCGGGTTCTCGCAACTGGTACTGGCGCGGGAGCTGAACCTGCAGCAAATCCGCGCCATCGCCGCCGAAACCGATGCCGCCATCGAGTTCTTCATCCACGGCGCGCTGTGCGTGGCGTTCTCTGGCCAATGCAACATTTCCCATGCGCAGACCGGCCGCAGCGCCAACCGTGGTGA  >  NC_002947/3966140‑3966423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.