New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5609699	42 (0.860)	6 (0.130)	5/240	NT	12.2%	coding (867/906 nt)	PP_4929	LysR family transcriptional regulator
	?	NC_002947	= 5609710	46 (0.980)					coding (856/906 nt)	PP_4929	LysR family transcriptional regulator

TGGCCGTAGGCCGGTGCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGC  >  NC_002947/5609551‑5609847                                                                                                                                                     |                                                                                                                                                     tGGCCGTAGGCCGGTGCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGgcca                                                                                                                                                     <  1:657221/150‑1 (MQ=255) tGGCCGTAGGCCGGTGCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGgcca                                                                                                                                                     >  1:1273564/1‑150 (MQ=255)       tAGGCCGGTGCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACt                                                                                                                                               >  2:1153837/1‑150 (MQ=255)          gCCGGTGCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGAAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGTTAAGTCTACCAGATCGCGCGCAGGTGCACTGCAAAGTGTCCGGCCgcgcagtggg                                                                                                                                            >  2:383221‑M1/1‑140 (MQ=255)                      cgcgcgcgcAGATACAGGCGCAGCGCAACCAGAGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCCCGGCCgcgcagtggctggccgagcgct                                                                                                                                <  1:383221‑M1/150‑23 (MQ=255)                                     aGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGGCCAGAGGTTCATCgcggc                                                                                                                 >  1:817488/1‑150 (MQ=255)                                         gcagcgcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCgcca                                                                                                             >  2:261541/1‑150 (MQ=255)                                            gcgcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCa                                                                                                                                <  1:810656/128‑1 (MQ=255)                                            gcgcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCa                                                                                                                                >  2:810656/1‑128 (MQ=255)                                            gcgcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCgccaggc                                                                                                          >  2:1075706/1‑150 (MQ=255)                                                                 ggTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCcgg                                                                                     <  1:1075706/150‑1 (MQ=255)                                                                  gTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGGCTACCCGATGGCGCGAGGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCcggc                                                                                    <  1:1230167/150‑1 (MQ=255)                                                                         aGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGgccgcc                                                                             >  1:706259/1‑150 (MQ=255)                                                                             aGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTc                                                                         <  2:203442/150‑1 (MQ=255)                                                                                  taGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGt                                                                    >  1:1189884/1‑150 (MQ=255)                                                                                   agagagTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTCCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTc                                                                   <  2:389322/150‑1 (MQ=255)                                                                                    gagagTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGTCCGGCGGCCGCCAGTCGCTGTcc                                                                  >  2:1284498/1‑150 (MQ=255)                                                                                     agagTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGGCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCa                                                                 <  2:817488/150‑1 (MQ=255)                                                                                       agTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCgcgcagtggctggccga                                                                                                                                     <  1:939878‑M1/80‑18 (MQ=255)                                                                                       agTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCgcgcagtggctggccga                                                                                                                                     >  2:939878‑M1/1‑63 (MQ=255)                                                                                         ttCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCgcgcagtggctggccga                                                                                                                                     <  1:260096‑M1/78‑18 (MQ=255)                                                                                         ttCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCgcgcagtggctggccga                                                                                                                                     >  2:260096‑M1/1‑61 (MQ=255)                                                                                         ttCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTc                                                             >  1:286067/1‑150 (MQ=255)                                                                                            tGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGAc                                                          >  1:982887/1‑150 (MQ=255)                                                                                                 aTGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTACCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCAtgt                                                     >  2:683171/1‑150 (MQ=255)                                                                                                         tAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTgg                                             <  2:1273564/150‑1 (MQ=255)                                                                                                             tCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAgg                                                                                                                            >  2:651452/1‑67 (MQ=255)                                                                                                             tCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAgg                                                                                                                            <  1:651452/67‑1 (MQ=255)                                                                                                              cTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGt                                            >  2:667428/1‑146 (MQ=255)                                                                                                              cTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAAGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCGGGt                                            <  1:667428/146‑1 (MQ=255)                                                                                                               tACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCTGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGcc                                                >  1:186027/1‑141 (MQ=255)                                                                                                               tACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCTGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGcc                                                <  2:186027/141‑1 (MQ=255)                                                                                                               tACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTc                                       >  2:1035550/1‑150 (MQ=255)                                                                                                                aCCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCg                                      >  1:1220969/1‑150 (MQ=255)                                                                                                                 cccGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGc                                                                                                      >  2:389045/1‑85 (MQ=255)                                                                                                                 cccGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGc                                                                                                      <  1:389045/85‑1 (MQ=255)                                                                                                                 cccGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGc                                                                                        <  2:1178197/99‑1 (MQ=255)                                                                                                                 cccGATCGCGCGAAGGTGCACTGCAAAGCGCTCGCCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGc                                                                                        >  1:1178197/1‑99 (MQ=255)                                                                                                                      tCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGcc                                                                                       <  2:505876/95‑1 (MQ=255)                                                                                                                      tCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGcc                                                                                       >  1:505876/1‑95 (MQ=255)                                                                                                                           cgAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGcacc                           <  1:1035550/150‑1 (MQ=255)                                                                                                                            gAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGcacca                          >  2:1208341/1‑150 (MQ=255)                                                                                                                                gTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTgc                                                   <  2:259036/121‑1 (MQ=255)                                                                                                                                gTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTgc                                                   >  1:259036/1‑121 (MQ=255)                                                                                                                                gTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATg                      >  1:1188128/1‑150 (MQ=255)                                                                                                                                  gCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGcc                    >  2:65672/1‑150 (MQ=255)                                                                                                                                    aCTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCgg                  >  1:93608/1‑150 (MQ=255)                                                                                                                                      tGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAg                                          >  2:568832/1‑124 (MQ=255)                                                                                                                                      tGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAg                                          <  1:568832/124‑1 (MQ=255)                                                                                                                                      tGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCgggg                <  2:706259/150‑1 (MQ=255)                                                                                                                                           aGCGCTCGGCCAGCCACTGCGCggccgggcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaactctctataccttgctgtttcacctgggcctgcctctggttgcgctgcgcctgtatctgcgcgcgcg           <  1:383221‑M2/150‑129 (MQ=255)                                                                                                                                                tCGGCCAGCCACTGCGCggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaact                                                                            >  2:939878‑M2/1‑17 (MQ=255)                                                                                                                                                tCGGCCAGCCACTGCGCggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaact                                                                            <  1:939878‑M2/80‑64 (MQ=255)                                                                                                                                                tCGGCCAGCCACTGCGCggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaa                                                                              >  2:260096‑M2/1‑17 (MQ=255)                                                                                                                                                tCGGCCAGCCACTGCGCggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaa                                                                              <  1:260096‑M2/78‑62 (MQ=255)                                                                                                                                                    ccagccaCTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGc  >  1:1280348/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TGGCCGTAGGCCGGTGCCTTGCGCGCGCGCAGATACAGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGC  >  NC_002947/5609551‑5609847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.