New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5609699	42 (0.860)	6 (0.130)	5/240	NT	12.2%	coding (867/906 nt)	PP_4929	LysR family transcriptional regulator
	?	NC_002947	= 5609710	46 (0.980)					coding (856/906 nt)	PP_4929	LysR family transcriptional regulator

AGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGC  >  NC_002947/5609587‑5609853                                                                                                                            |                                                                                                                                                aGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGGCCAGAGGTTCATCgcggc                                                                                                                       >  1:817488/1‑150 (MQ=255)     gcagcgcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCgcca                                                                                                                   >  2:261541/1‑150 (MQ=255)        gcgcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCa                                                                                                                                      >  2:810656/1‑128 (MQ=255)        gcgcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCa                                                                                                                                      <  1:810656/128‑1 (MQ=255)        gcgcaACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCgccaggc                                                                                                                >  2:1075706/1‑150 (MQ=255)                             ggTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCcgg                                                                                           <  1:1075706/150‑1 (MQ=255)                              gTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGGCTACCCGATGGCGCGAGGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCcggc                                                                                          <  1:1230167/150‑1 (MQ=255)                                     aGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGgccgcc                                                                                   >  1:706259/1‑150 (MQ=255)                                         aGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTc                                                                               <  2:203442/150‑1 (MQ=255)                                              taGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGt                                                                          >  1:1189884/1‑150 (MQ=255)                                               agagagTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTCCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTc                                                                         <  2:389322/150‑1 (MQ=255)                                                gagagTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGTCCGGCGGCCGCCAGTCGCTGTcc                                                                        >  2:1284498/1‑150 (MQ=255)                                                 agagTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGGCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCa                                                                       <  2:817488/150‑1 (MQ=255)                                                     ttCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTc                                                                   >  1:286067/1‑150 (MQ=255)                                                        tGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGAc                                                                >  1:982887/1‑150 (MQ=255)                                                             aTGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTACCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCAtgt                                                           >  2:683171/1‑150 (MQ=255)                                                                     tAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTgg                                                   <  2:1273564/150‑1 (MQ=255)                                                                         tCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAgg                                                                                                                                  <  1:651452/67‑1 (MQ=255)                                                                         tCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAgg                                                                                                                                  >  2:651452/1‑67 (MQ=255)                                                                          cTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGt                                                  >  2:667428/1‑146 (MQ=255)                                                                          cTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAAGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCGGGt                                                  <  1:667428/146‑1 (MQ=255)                                                                           tACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCTGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGcc                                                      >  1:186027/1‑141 (MQ=255)                                                                           tACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCTGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGcc                                                      <  2:186027/141‑1 (MQ=255)                                                                           tACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTc                                             >  2:1035550/1‑150 (MQ=255)                                                                            aCCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCg                                            >  1:1220969/1‑150 (MQ=255)                                                                             cccGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGc                                                                                                            <  1:389045/85‑1 (MQ=255)                                                                             cccGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGc                                                                                                            >  2:389045/1‑85 (MQ=255)                                                                             cccGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGc                                                                                              <  2:1178197/99‑1 (MQ=255)                                                                             cccGATCGCGCGAAGGTGCACTGCAAAGCGCTCGCCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGc                                                                                              >  1:1178197/1‑99 (MQ=255)                                                                                  tCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGcc                                                                                             >  1:505876/1‑95 (MQ=255)                                                                                  tCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGcc                                                                                             <  2:505876/95‑1 (MQ=255)                                                                                       cgAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGcacc                                 <  1:1035550/150‑1 (MQ=255)                                                                                        gAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGcacca                                >  2:1208341/1‑150 (MQ=255)                                                                                            gTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTgc                                                         >  1:259036/1‑121 (MQ=255)                                                                                            gTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTgc                                                         <  2:259036/121‑1 (MQ=255)                                                                                            gTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATg                            >  1:1188128/1‑150 (MQ=255)                                                                                              gCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGcc                          >  2:65672/1‑150 (MQ=255)                                                                                                aCTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCgg                        >  1:93608/1‑150 (MQ=255)                                                                                                  tGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAg                                                <  1:568832/124‑1 (MQ=255)                                                                                                  tGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAg                                                >  2:568832/1‑124 (MQ=255)                                                                                                  tGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCgggg                      <  2:706259/150‑1 (MQ=255)                                                                                                       aGCGCTCGGCCAGCCACTGCGCggccgggcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaactctctataccttgctgtttcacctgggcctgcctctggttgcgctgcgcctgtatctgcgcgcgcg                 <  1:383221‑M2/150‑129 (MQ=255)                                                                                                            tCGGCCAGCCACTGCGCggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaact                                                                                  >  2:939878‑M2/1‑17 (MQ=255)                                                                                                            tCGGCCAGCCACTGCGCggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaact                                                                                  <  1:939878‑M2/80‑64 (MQ=255)                                                                                                            tCGGCCAGCCACTGCGCggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaa                                                                                    <  1:260096‑M2/78‑62 (MQ=255)                                                                                                            tCGGCCAGCCACTGCGCggccgagcgctttgcagtgcaccttcgcgcgatcgggtagacttagccgccatgaacagaa                                                                                    >  2:260096‑M2/1‑17 (MQ=255)                                                                                                                ccagccaCTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGc        >  1:1280348/1‑150 (MQ=255)                                                                                                                   cccacTGCGCggccggacactttgcagtgcacctgcgcgcgatctggtagacttaaccgccatgaacagaactctctataccttgctgtttcacctgggccttccgctggttgcgctgcgcctgtatctgcgcgcgcgcaaggcaccggc     >  2:383221‑M2/2‑10 (MQ=255)                                                                                                                    ccaCTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAAc                  <  1:758425/136‑1 (MQ=255)                                                                                                                    ccaCTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAAc                  >  2:758425/1‑136 (MQ=255)                                                                                                                      aCTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCAGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGc  >  1:646595/1‑150 (MQ=255)                                                                                                                      aCTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCAGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGc  >  1:3909/1‑150 (MQ=255)                                                                                                                         gcgcGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCcg                                                                                            >  2:211195/1‑57 (MQ=255)                                                                                                                         gcgcGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCcg                                                                                            <  1:211195/57‑1 (MQ=255)                                                                                                                            |                                                                                                                                                AGGCGCAGCGCAACCAGCGGCAGGCCCAGGTGAAACAGCAAGGTATAGAGAGTTCTGTTCATGGCGGCTAAGTCTACCCGATCGCGCGAAGGTGCACTGCAAAGCGCTCGGCCAGCCACTGCGCGGCCGGGCCCAGAGGTTCATCGCGGCGCCAGGCCAGCTCTGCCACCAAGGCCGGCGGCCGCCAGTCGCTGTCCAGTTCGACCATGTGCGCCTGGTAGGTCGGGTACTGCACCACATGCCGGGGTAACCAGGCCCAGCCAAGGC  >  NC_002947/5609587‑5609853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.