New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 461367	45 (0.920)	3 (0.070)	3/234	NT	6.4%	coding (1101/2301 nt)	pqqF	coenzyme PQQ synthesis protein F
	?	NC_002947	= 461389	46 (1.000)					coding (1079/2301 nt)	pqqF	coenzyme PQQ synthesis protein F

TTCAGCGCTGCCGGCAGCGGTTGCGCCTTGGCATGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGTTCGCGGTCGGCCTGACGGATGAACCTGAACCAACCTTGCAGCAGG  >  NC_002947/461242‑461538                                                                                                                                                    |                                                                                                                                                      ttCAGCGCTGCCGGCAGCGGTTGCGCCTTGGCATGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAgc                                                                                                                                                     <  1:756869‑M2/150‑3 (MQ=255)     gcgcTGCCGGCAGCGGTTGCGCCTTGGCATGGGGCAGGTCAGCCTTTAGACATGCGTTTACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTCGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAgcttgg                                                                                                                                                 >  2:304422‑M2/1‑144 (MQ=255)     gcgcTGCCGGCAGCGGTTGCGCCTTGGCATGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAgcttgg                                                                                                                                                 >  2:160264‑M2/1‑144 (MQ=255)     gcgcTGCCGGCAGCGGTTGCGCCTTGGCATGGGGCAGGTCAGCCTTCAGCAATGGGTAGCCTCAGAACAGCTTGCAATCGCCATGGTCGGCACATAGCAGGCTTTAAAGAAGCCTTCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTgg                                                                                                                                                 <  1:1254308/150‑1 (MQ=255)      cgcTGCCGGCAGCGGTTGCGCCTTGGCATGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAgcttggc                                                                                                                                                >  2:625868‑M2/1‑143 (MQ=255)           ccGGCAGCGGTTGCGCCTTGGCATGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACg                                                                                                                                           <  1:1011710/150‑1 (MQ=255)              gCAGCGGTTGCGCCTTGGCATGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCt                                                                                                                                        >  2:790228/1‑150 (MQ=255)                       gcgcCTTGGCATGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGc                                                                                                                               <  1:140497/150‑1 (MQ=255)                        cgcCTTGGCATGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCt                                                                                                                              <  1:803702/150‑1 (MQ=255)                          ccTTGGCATGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCt                                                                                                                                        >  2:342526/1‑138 (MQ=255)                          ccTTGGCATGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCt                                                                                                                                        <  1:342526/138‑1 (MQ=255)                                  tGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCcggcgg                                                                                                                    <  1:853763/150‑1 (MQ=255)                                  tGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGACAGGTCCGAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCcggcgg                                                                                                                    <  1:1253678/150‑1 (MQ=255)                                            cAGCCTTCAGCAAGGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGa                                                                                                          <  2:415602/150‑1 (MQ=255)                                                 ttCAGCAATGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGATTGGCGAACGACTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAgcgcg                                                                                                     >  1:376746/1‑150 (MQ=255)                                                   cAGCAATGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCt                                                                                                   >  1:30123/1‑150 (MQ=255)                                                           tggcGATTGGCAGCTGCTGCCAGTCGACATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACtgt                                                                                           >  2:63573/4‑150 (MQ=255)                                                                 cTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTc                                                                                     >  1:982413/1‑150 (MQ=255)                                                                 cTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTc                                                                                     <  1:9726/150‑1 (MQ=255)                                                                  tGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCg                                                                                    <  1:43729/150‑1 (MQ=255)                                                                     cagcagCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGATTGGCGAACGACTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCt                                                                                 <  2:376746/150‑1 (MQ=255)                                                                        cagcTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCtgtg                                                                              <  2:30123/150‑1 (MQ=255)                                                                              ccAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAg                                                                        <  2:1139678/150‑1 (MQ=255)                                                                               cAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGt                                                                       >  2:1078408/1‑150 (MQ=255)                                                                                aaTCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGt                                                                       <  2:700481/149‑1 (MQ=255)                                                                                aaTCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGt                                                                       >  1:700481/1‑149 (MQ=255)                                                                                    gCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGcc                                                                  >  2:204660/1‑150 (MQ=255)                                                                                      cATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGACGAACGGCTGGCCAGTGCTGTCCcggcgg                                                                                                                    >  1:523730/1‑98 (MQ=255)                                                                                      cATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGACGAACGGCTGGCCAGTGCTGTCCcggcgg                                                                                                                    <  2:523730/98‑1 (MQ=255)                                                                                           tCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAgcgc                                                                                                      <  1:133505/107‑1 (MQ=255)                                                                                           tCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAgcgc                                                                                                      >  2:133505/1‑107 (MQ=255)                                                                                           tCGGCACCTGGCAGGCTTTCCAGCAGGGCGCAAAGCGCCTGCAACCCTTGGTTATCCAGGTGGGCGAACGGCTGGCCAGGGCTGTCCCGGCGGGCCAACTCGAGACCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAACCCGAATTGa                                                           <  2:280119/150‑1 (MQ=255)                                                                                              gCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATgg                                                        >  1:343342/1‑150 (MQ=255)                                                                                                  cTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCa                                                    >  2:1225813/1‑150 (MQ=255)                                                                                                     ccAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACt                                                 <  2:477416/149‑1 (MQ=255)                                                                                                       aGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGt                                               >  1:876589/1‑150 (MQ=255)                                                                                                               cagcagGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGTTCGCGGTc                                       <  1:204660/150‑1 (MQ=255)                                                                                                                agcagGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAgcttggcgccctgctggaaagcctgccaggtgccgaccatggcgattggcagctgctgccagtcgacccattgctgaaggctgacctgccccatgccaaggcgcaaccgctgc                                      <  2:61112‑M2/150‑114 (MQ=255)                                                                                                                 gcagGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGTTCGCGGTCgg                                     >  2:587760/1‑150 (MQ=255)                                                                                                                     ggCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGTTCGCGGTCGGCCTg                                 >  1:1235973/1‑150 (MQ=255)                                                                                                                        gcCAAGCGCCTGCAACCCTTGGGTATCCAgcttggcgccctgctggaaagcctgccaggtgccgaccatggcgattggcagctgctgccagtcgacccattgctgaaggctgacctgccccatgccaagg                                                  <  1:557317‑M2/130‑102 (MQ=255)                                                                                                                        gcCAAGCGCCTGCAACCCTTGGGTATCCAgcttggcgccctgctggaaagcctgccaggtgccgaccatggcgattggcagctgctgccagtcgacccattgctgaaggctgacctgccccatgccaagg                                                  >  2:557317‑M2/1‑29 (MQ=255)                                                                                                                          cAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTTCACTGTTCGCGGTCGGCCTGACGGa                            >  1:539434/1‑150 (MQ=255)                                                                                                                          cAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGTTCGCGGTCGGCCTGACGGa                            <  2:1235973/150‑1 (MQ=255)                                                                                                                          cAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGTTCGCGGTCGGCCTGACGGa                            >  2:558652/1‑150 (MQ=255)                                                                                                                           aaGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCTGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGTTCGCGGTCGGCCTGACGGAt                           >  2:700341/1‑150 (MQ=255)                                                                                                                           aaGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGTTCGCGGTCGGCCTGCCGGAt                           <  2:343342/150‑1 (MQ=255)                                                                                                                                  tGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGTTCGCGGTCGGCCTGACGGAtgaacctg                    >  2:975702/1‑150 (MQ=255)                                                                                                                                  tGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGTTCGCGGTCGGCCTGACGGAtgaacctg                    >  2:892856/1‑150 (MQ=255)                                                                                                                                     aaCCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGTTCGCGGTCGGCCTGACGGAtgaacctgaac                 <  1:790228/150‑1 (MQ=255)                                                                                                                                            gggTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTg                                                                                                  <  2:356644/62‑1 (MQ=255)                                                                                                                                            gggTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTg                                                                                                  >  1:356644/1‑62 (MQ=255)                                                                                                                                            gggTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCtgtg                                                                              <  2:142969/82‑1 (MQ=255)                                                                                                                                            gggTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCtgtg                                                                              >  1:142969/1‑82 (MQ=255)                                                                                                                                              gTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGTTCGCGGTCGGCCTGACGGATGAACCTGAACCAACCTTgc        >  1:1229432/1‑150 (MQ=255)                                                                                                                                                   cAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGTTCGCGGTCGGCCTGACGGATGAACCTGAACCAACCTTGcagcag   >  1:91950/1‑150 (MQ=255)                                                                                                                                                    aGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGTTCGCGGTCGGCCTGACGGATGAACCTGAACCAACCTTGCAGCAgg  <  1:1078408/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      TTCAGCGCTGCCGGCAGCGGTTGCGCCTTGGCATGGGGCAGGTCAGCCTTCAGCAATGGGTCGACTGGCAGCAGCTGCCAATCGCCATGGTCGGCACCTGGCAGGCTTTCCAGCAGGGCGCCAAGCGCCTGCAACCCTTGGGTATCCAGCTTGGCGAACGGCTGGCCAGTGCTGTCCCGGCGGGCCAACTCGAGCGCGCTGGCACTGTGCGCTCGGCTGTGCTGCAGTAAGCCGAATTGATGGTTCAACTGTTCGCGGTCGGCCTGACGGATGAACCTGAACCAACCTTGCAGCAGG  >  NC_002947/461242‑461538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.