New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2365763	47 (0.960)	4 (0.080)	4/240	NT	7.8%	coding (156/906 nt)	lysR	transcriptional regulator LysR
	?	NC_002947	= 2365793	50 (1.060)					coding (186/906 nt)	lysR	transcriptional regulator LysR

CATCATGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCAAACCTTGTTGC  >  NC_002947/2365646‑2365932                                                                                                                                                    |                                                                                                                                            catcatGGCCGCTGGCAGTGTCCCGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCTACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgc                                                                                                                                           <  2:1167355‑M2/150‑3 (MQ=255) catcatGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgc                                                                                                                                           <  1:736741‑M2/150‑3 (MQ=255)            cTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGa                                                                                                                                <  2:899027/150‑1 (MQ=255)             tGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTAGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGAt                                                                                                                               <  2:1126181/150‑1 (MQ=255)                 aGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGaa                                                                                                                           <  2:736741/150‑1 (MQ=255)                     tCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAagag                                                                                                                        >  1:785396/1‑149 (MQ=255)                     tCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAagag                                                                                                                        <  2:785396/149‑1 (MQ=255)                       aCGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTc                                                                                                                     >  1:995682/1‑150 (MQ=255)                             gcggcgCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCgg                                                                                                               <  1:93291/150‑1 (MQ=255)                                               aCCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAg                                                                                             >  2:80271/1‑150 (MQ=255)                                                  tCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGGCTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCgg                                                                                          >  2:93901/1‑150 (MQ=255)                                                  tCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGC‑GGAGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGga                                                                                         >  2:304834/1‑150 (MQ=255)                                                      aGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGgatcg                                                                                      >  1:388152/1‑150 (MQ=255)                                                            ccGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACATGTTCGAGCGCAAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCt                                                                                >  2:954518/1‑150 (MQ=255)                                                              gTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCttt                                                                              >  2:778984/1‑150 (MQ=255)                                                               tCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCgg                                                                                                               >  1:1205883/1‑116 (MQ=255)                                                               tCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCgg                                                                                                               <  2:1205883/116‑1 (MQ=255)                                                                 aGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCg                                                                                           <  1:376727/134‑1 (MQ=255)                                                                 aGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCg                                                                                           >  2:376727/1‑134 (MQ=255)                                                                    cgcgAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAg                                                                        <  2:995682/150‑1 (MQ=255)                                                                     gcgAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCgg                                                                                                               <  1:1129122/110‑1 (MQ=255)                                                                     gcgAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCgg                                                                                                               >  2:1129122/1‑110 (MQ=255)                                                                           tGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATcc                                                                 <  1:1167355/150‑1 (MQ=255)                                                                               gcgGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCaa                                                             <  2:558543/150‑1 (MQ=255)                                                                                   cTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTc                                                         >  1:1072267/1‑150 (MQ=255)                                                                                   cTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTc                                                         <  1:910400/150‑1 (MQ=255)                                                                                          aGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACtt                                                          >  2:77027/1‑142 (MQ=255)                                                                                          aGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACtt                                                          <  1:77027/142‑1 (MQ=255)                                                                                           ggTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGc                                                                                            >  2:553731/1‑107 (MQ=255)                                                                                           ggTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGc                                                                                            <  1:553731/107‑1 (MQ=255)                                                                                            gTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGc                                                >  1:1207988/1‑150 (MQ=255)                                                                                                cTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgcgctcgaacaggttcaggccagtcacctgctccagccgcgccagttcgcggctgacggtcggctgcgaggtg                                                                    >  1:104508‑M2/1‑53 (MQ=255)                                                                                                cTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgcgctcgaacaggttcaggccagtcacctgctccagccgcgccagttcgcggctgacggtcggctgcgaggtg                                                                    <  2:104508‑M2/126‑74 (MQ=255)                                                                                                cTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGgatcgat                                                                                    <  1:401665/110‑1 (MQ=255)                                                                                                cTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGgatcgat                                                                                    >  2:401665/1‑110 (MQ=255)                                                                                                 tGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCt                                           >  1:1073264/1‑150 (MQ=255)                                                                                                   gCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTgg                                         >  1:93686/1‑150 (MQ=255)                                                                                                    ccTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGc                                        >  2:272529/1‑150 (MQ=255)                                                                                                        aaCCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATc                                    <  1:778984/150‑1 (MQ=255)                                                                                                           cTGTTCGAGCGCGAGGGC‑GGAGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCAcct                                <  1:304834/150‑1 (MQ=255)                                                                                                              ttCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgcgctcgaacaggttcaggccagtcacctgctccagccgcgccagttcgcggctga                                                                                     <  2:217308‑M2/95‑57 (MQ=255)                                                                                                              ttCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGgcgctcgaacaggttcaggccagtcacctgctccagccgcgccagttcgcggctga                                                                                     >  1:217308‑M2/1‑39 (MQ=255)                                                                                                              ttCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCAcctgc                              <  2:1072267/150‑1 (MQ=255)                                                                                                              ttCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCAcctgc                              >  2:508874/1‑150 (MQ=255)                                                                                                                 gAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCAcctgcctg                           >  1:388084/1‑150 (MQ=255)                                                                                                                       gAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTg                     <  2:1207988/150‑1 (MQ=255)                                                                                                                           gcgggcgCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTACCGCTGTtct                 >  1:99603/1‑150 (MQ=255)                                                                                                                              ggcgCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGc              <  1:93901/150‑1 (MQ=255)                                                                                                                                 gcCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCaaa           >  1:702195/1‑150 (MQ=255)                                                                                                                                 gcCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCaaa           >  2:58043/1‑150 (MQ=255)                                                                                                                                   cTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCt                      >  2:1074906/1‑137 (MQ=255)                                                                                                                                   cTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCt                      <  1:1074906/137‑1 (MQ=255)                                                                                                                                   cTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCAAAcc         >  1:1105127/1‑150 (MQ=255)                                                                                                                                      gtggCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCAAACCttg      <  1:916303/150‑1 (MQ=255)                                                                                                                                      gtggCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCAAACCttg      <  2:702195/150‑1 (MQ=255)                                                                                                                                          cGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATACACTTTGTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCAAACCTTGTTGc  <  1:80271/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                            CATCATGGCCGCTGGCAGTGTCACGGGGGCGGCGCGCCTGCTGTTCACCTCGCAGCCGACCGTCAGCCGCGAACTGGCGCGGCTGGAGCAGGTGACTGGCCTGAACCTGTTCGAGCGCGAGGGCGGGCGCCTGGTGGCGACGGCCCAGGCGCTGCTGTTGATCGAAGAGGTCGAGCGGGCCTACGTCGGGCTGGAGCGGATCGATCGCTTTGCCCAGGCCATCCGCAACTTCGAGCAGGGCCGGCTGGCCATCACCTGCCTGCCGCTGTTCTCGCAAACCTTGTTGC  >  NC_002947/2365646‑2365932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.