New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 6006630 | 24 (0.390) | 16 (0.350) | 13/190 | 2.9 | 41.9% | intergenic (+42/+57) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
? | NC_002947 | = 6006642 | 27 (0.600) | intergenic (+54/+45) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
GCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6006455‑6006630 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggcctcttcgcgggctcgcccgctcccacaggt‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCATCCTGTAC < NC_002947/6006642‑6006502 GCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCCCT < 1:1584535/150‑1 CAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGC < 1:1498266/150‑1 ACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGG < 2:1292601/150‑1 CGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGCACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGG > 1:14306/1‑150 CGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGG < 1:1058690/150‑1 CGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGG > 1:1129071/1‑150 CAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTC > 2:352242/1‑150 GAAGCGTTCGCAGCGGCGATGGGGTTGCGGGTAAAGGATGTTCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCT < 2:14306/150‑1 GCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCC > 2:948629/1‑150 TCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAG < 1:669323/150‑1 CTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTC < 1:1422517/114‑1 CTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTC > 2:1422517/1‑114 CAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGT < 1:1551950/150‑1 GTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGG < 2:1064494/150‑1 AGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCG < 1:352242/150‑1 GGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGG < 2:1129071/150‑1 AAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGG > 2:1480898/1‑99 AAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGG < 1:1480898/99‑1 CGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTG < 1:889358/109‑1 CGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTG > 2:889358/1‑109 GTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCC > 1:634215/1‑82 GTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCC < 2:634215/82‑1 CTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGG > 2:653713/1‑96 CTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGG < 1:653713/96‑1 ACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGA < 1:11269/92‑1 ACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGA > 2:11269/1‑92 ACAGGCGTTGAACCTGGGTTCGATGTAAATCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGG > 1:907896/1‑90 ACAGGCGTTGAACCTGGGTTCGATGTAAATCTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGG < 2:907896/90‑1 ACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGA > 2:1373713/1‑81 ACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGA < 1:1373713/81‑1 TTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGG > 2:717931/1‑79 TTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGG < 1:717931/79‑1 CTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGC < 1:755018/66‑1 CTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGC > 2:755018/1‑66 ttTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGC > 1:948629/3‑150 aGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGT > 2:928149/2‑43 aGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGT < 1:928149/42‑1 GCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGC < 2:325298/102‑1 GCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGC > 1:325298/1‑102 GCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGAC > 2:99598/1‑120 GCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGAC < 1:99598/120‑1 TCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCGAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTC > 1:360281/1‑150 TCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTC > 1:860758/1‑150 TCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAAC < 2:616137/94‑1 TCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAAC < 2:616353/94‑1 TCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAAC > 1:616137/1‑94 TCGCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAAC > 1:616353/1‑94 GCCCGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCAT > 1:1086756/1‑150 CGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGT > 2:147356/1‑95 CGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGT < 1:147356/95‑1 CGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGA < 1:743348/66‑1 CGCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGA > 2:743348/1‑66 GCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCATCCTG > 2:159367/1‑150 GCTCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCATCCTG > 2:1085211/1‑150 TCCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCATCCTGTA > 2:1050865/1‑150 CCCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCATCCTGTAC > 2:682083/1‑150 CCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCATCCTGTAC < 2:873046/149‑1 CCACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCATCCTGTAC > 1:873046/1‑149 CACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCATCGACCGGCGCTCGCTTTGC > 1:500231/1‑122 CACAGGT‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGC < 2:500231/122‑1 GCAGCAACGCCAACCGCGAAGCGTTCGAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6006455‑6006630 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accggcctcttcgcgggctcgcccgctcccacaggt‑‑‑‑‑‑CGTATGCCCTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTACAGATTTACATCGAACCCAGGTTCAACGCCTGTGCACAGGCCTGCAGCGACCGGCGCTCGCTTTGCGCATACAGCGCCAGCTCATCCTGTAC < NC_002947/6006642‑6006502 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |