| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6006630 | 24 (0.390) | 16 (0.350) | 13/190 | 2.9 | 41.9% | intergenic (+42/+57) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
| ? | NC_002947 | = 6006642 | 27 (0.600) | intergenic (+54/+45) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator | |||||
GTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCG > NC_002947/6006502‑6006791 | gTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtggg > 2:682083‑M2/1‑141 (MQ=255)gTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgg < 2:873046‑M2/149‑9 (MQ=255)gTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgg > 1:873046‑M2/1‑141 (MQ=255) tACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtggga > 2:1050865‑M2/1‑140 (MQ=255) cAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagc > 2:159367‑M2/1‑138 (MQ=255) cAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagc > 2:1085211‑M2/1‑138 (MQ=255) aTGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggc > 1:1086756‑M2/1‑134 (MQ=255) gAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcga > 1:860758‑M2/1‑132 (MQ=255) gAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTCGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcga > 1:360281‑M2/1‑132 (MQ=255) gcAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtg < 2:500231‑M2/122‑8 (MQ=255) gcAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGCACAGGTCGTATGccctgtacctgtgggagcgggcgagcccgcgaaaa > 1:948629‑M2/1‑115 (MQ=255) gcAAAGCGAGCGCCGGTCGATGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtg > 1:500231‑M2/1‑115 (MQ=255) gTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcgagc > 2:99598‑M2/1‑100 (MQ=255) gTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcgagc < 1:99598‑M2/120‑21 (MQ=255) acaGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcg > 2:147356‑M2/1‑82 (MQ=255) acaGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcg < 1:147356‑M2/95‑14 (MQ=255) gCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgc < 2:325298‑M2/102‑25 (MQ=255) gCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgc > 1:325298‑M2/1‑78 (MQ=255) gTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcga > 1:616353‑M2/1‑76 (MQ=255) gTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcga > 1:616137‑M2/1‑76 (MQ=255) gTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcga < 2:616137‑M2/94‑19 (MQ=255) gTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcga < 2:616353‑M2/94‑19 (MQ=255) tCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcg < 1:743348‑M2/66‑14 (MQ=255) tCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcg > 2:743348‑M2/1‑53 (MQ=255) tctTCGCGGGCTCGGCCGCTCCCACAGGTACCGGGCATACGACCAGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCGGGTGATCAAAGACGCGGCAGGACTTCCACATCCGGCCAATCCATTGCCTCCACCTCCCCTTCCggggccg > 2:1226670/1‑146 (MQ=37) gcgGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagag < 1:755018‑M2/66‑31 (MQ=255) gcgGGCTCGCCCGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagag > 2:755018‑M2/1‑36 (MQ=255) gCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATc < 2:1527382/112‑1 (MQ=255) gCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATc > 1:1527382/1‑112 (MQ=255) cccGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaa < 1:717931‑M2/79‑53 (MQ=255) cccGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaa > 2:717931‑M2/1‑27 (MQ=255) ccGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctcatcc < 2:1129071‑M2/150‑125 (MQ=255) cGCTCCCACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctcatcct < 1:352242‑M2/150‑126 (MQ=255) tCCCACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgt > 2:11269‑M2/1‑22 (MQ=255) tCCCACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgt < 1:11269‑M2/92‑71 (MQ=255) tCCCACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggt < 1:1373713‑M2/81‑60 (MQ=255) tCCCACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggt > 2:1373713‑M2/1‑22 (MQ=255) tCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCg > 2:621254/1‑150 (MQ=255) tCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCg > 1:1142850/1‑150 (MQ=255) cccACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctcatcctgtac < 2:1064494‑M2/150‑130 (MQ=255) ccACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtgcagatttacatcgaacccaggttcaacgcctgt > 1:907896‑M2/1‑20 (MQ=255) ccACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtgcagatttacatcgaacccaggttcaacgcctgt < 2:907896‑M2/90‑71 (MQ=255) ccACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacag > 2:653713‑M2/1‑20 (MQ=255) ccACAGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacag < 1:653713‑M2/96‑77 (MQ=255) ccACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCaaa > 1:1256385/1‑69 (MQ=255) ccACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCaaa < 2:1256385/69‑1 (MQ=255) ccACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAg < 2:475526/70‑1 (MQ=255) ccACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAg > 1:475526/1‑70 (MQ=255) ccACAGGTACAGGGCATACGACCAGTGGGAGGGGGCGATCCCGCGAAGAGTCCGGTGCAGGTGATCAAAGAGGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt > 2:1137159/1‑150 (MQ=255) cacgGGTACAGTGCATACGACCCGTGGGCGCGGTCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCCGCAGGATTTCCACATCCGACGAAGACATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTc > 2:1083015/1‑150 (MQ=255) cacaGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccg < 1:889358‑M2/109‑91 (MQ=255) cacaGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccg > 2:889358‑M2/1‑19 (MQ=255) cacaGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTc > 2:992149/1‑84 (MQ=255) cacaGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTc < 1:992149/84‑1 (MQ=255) cacaGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAGCCGCCGCAACCGCTc > 2:1105065/1‑150 (MQ=255) acaGGTACAGGGCATACGacctgtgggagcgggcgagcccgct > 2:928149‑M2/1‑18 (MQ=255) acaGGTACAGGGCATACGacctgtgggagcgggcgagcccgct < 1:928149‑M2/43‑26 (MQ=255) acaGGTACAGGGCATACGacctgtgggagcgggcgagcccgcgaagaggccggtacagatttacatcgaacccaggttcaacgcctgtgcacaggcctgcagcgaccggcgctcgctttgcgcatacagcgccagctcatcctgtacctg < 1:1551950‑M2/150‑133 (MQ=255) tACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCt < 1:846659/107‑1 (MQ=255) tACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCt > 2:846659/1‑107 (MQ=255) tACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCgccgcc > 1:742993/1‑150 (MQ=255) gggCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGc > 2:1390029/1‑150 (MQ=255) ggCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATcc > 1:1489467/1‑80 (MQ=255) ggCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATcc < 2:1489467/80‑1 (MQ=255) ggCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGcc > 2:1385341/1‑150 (MQ=255) gCATACGACCTGTGGGCCCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCg > 2:390725/1‑150 (MQ=255) gCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCa < 1:305672/89‑1 (MQ=255) gCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCa > 2:305672/1‑89 (MQ=255) aTACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAAc > 1:1019435/1‑113 (MQ=255) aTACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAAc < 2:1019435/113‑1 (MQ=255) gACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTgcg > 2:452672/1‑150 (MQ=255) | GTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGCCTCGCCGGGTGCG > NC_002947/6006502‑6006791 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |