New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 1850914 = | 100 (0.870) | 7 (0.070) | 6/228 | NT | 7.3% | intergenic (+54/‑43) | rlmD/relA | 23S rRNA (uracil(1939)‑C(5))‑methyltransferase RlmD/ATP:GTP 3'‑pyrophosphotransferase |
? | NC_002947 | 1850937 = | 84 (0.790) | intergenic (+77/‑20) | rlmD/relA | 23S rRNA (uracil(1939)‑C(5))‑methyltransferase RlmD/ATP:GTP 3'‑pyrophosphotransferase |
TTCAGCGCTGCGCGATCCAGTGCCGAATCGACGCTTACCACATGGTCCAACCATGCTTCGAGATTGATACTGCCGTCAGTGTTGACCGGCTGGTGCACTCTCACCTGTACCATCTTTGTTTTACCTTTCCATGCAGCACAC‑CATACGAGTGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1851069‑1850914 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtgctgCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGAGTT > NC_002947/1850937‑1851084 TTCAGCGCTGCGCGATCCAGTGCCGAATCGACGCTTACCACATGGTCCAACCATGCTTCGAGATTGATACTGCCGTCAGTGTTGACCGGCTGGTGCACTCTCACCTGTACCTTCTTTGTTTTACCTTTCCATGCAGCACAC‑CATACGAGT < 1:912855/150‑1 CGCTGCGCGATCCAGTGCCGAATCGACGCTTACCACATGGTCCAACCATGCTTCGAGATTGATACTGCCGTCAGTGTTGACCGGCTGGTGCACTCTCACCTGTACCTTCTTTGTTTTACCTTTCCATGCAGCACAC‑CATACGAGTGTGCT > 1:2696625/1‑150 TCCAGTGCCGAATCGACGCTTACCACATGGTCCAACCATGCTTCGAGATTGATACTGCCGTCAGTGTTGACCGGCTGGTGCACTCTCACCTGTACCTTCTTTGTTTTACCTTTCCATGCAGCACACTCGTATG‑GTGTGCTGCATGGAAAG < 1:739125/150‑1 TTCCATGCAGCACAC‑CATACGAGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCG < 1:3003591/77‑1 TTCCATGCAGCACAC‑CATACGAGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCG > 2:3003591/1‑77 TTCCATGCAGCACAC‑CATACGAGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCA < 1:267128/70‑1 TTCCATGCAGCACAC‑CATACGAGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCA > 2:267128/1‑70 TGCAGCACAC‑CATACGAGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTC > 1:1787438/1‑75 TGCAGCACAC‑CATACGAGTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTC < 2:1787438/75‑1 GTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCA < 2:292642/121‑1 GTGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACAAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCA > 1:292642/1‑121 TGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGC > 1:2439944/1‑150 TGTGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGC > 2:1323063/1‑150 TGCTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGA < 1:796423/150‑1 CTGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGAGT > 1:2276340/1‑150 TGCATGGAAAGGTAAAACAAAGAAGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCCCTGAAAGAAGCCTGCGAGTT > 2:68718/1‑150 TTCAGCGCTGCGCGATCCAGTGCCGAATCGACGCTTACCACATGGTCCAACCATGCTTCGAGATTGATACTGCCGTCAGTGTTGACCGGCTGGTGCACTCTCACCTGTACCATCTTTGTTTTACCTTTCCATGCAGCACAC‑CATACGAGTGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1851069‑1850914 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtgctgCATGGAAAGGTAAAACAAAGATGGTACAGGTGAGAGTGCACCAGCCGGTCAACACTGACGGCAGTATCAATCTCGAAGCATGGTTGGACCATGTGGTAAGCGTCGATTCGGCACTGGATCGCGCAGCGCTGAAAGAAGCCTGCGAGTT > NC_002947/1850937‑1851084 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |