| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3775020 = | 144 (1.260) | 7 (0.060) | 5/230 | NT | 5.1% | intergenic (‑4/+47) | PP_3335/PP_3336 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 3775055 = | 126 (1.170) | intergenic (‑39/+12) | PP_3335/PP_3336 | hypothetical protein/hypothetical protein | |||||
CCCTGCCTGTGCTGCCTGTCGACCAGCAACCCGCTGTTCTGGTGCATTCGCCCCGGCACTGCTGGCCGTCGATCAACCCCCGTGCCTCCCCGAAAGTGATCGCCTGACCTGCAAGGACCCAGGCCGCACCCGCTAAAAGCGGGGCGTCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3775173‑3775020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAATCAAAGAGGCAGGCA > NC_002947/3775055‑3775203 CCCTGCCTGTGCTGCCTGTCGACCAGCAACCCGCTGTTCTGGTGCATTCGCCCCGGCACTGCTGGCCGTCGATCAACCCCCGTGCCTCCCCGAAAGTGATCGCCTCACCTGCAAGGACCCAGGCCGCACCCGCTAAAAGCGGGGCGTCGG < 2:2412556/150‑1CCCTGCCTGTGCTGCCTGTCGACCAGCAACCCGCTGTTCTGGTGCATTCGCCCCGGCACTGCTGGCCGTCGATCAACCCCCGTGCCCCCCCGAAAGTGATCGCCTGACCTGCAAGGACCCAGGCCGCACCCGCTAAAAGCGGGGCGTCGG > 1:853430/1‑150 CCTGCCTGTGCCGCCGGTCGACCAGCAACCCGCTGTTCTGGTGCATTCGCCCCGGCACTGCTGGCCGTCGATCAACCCCCGTGCCTCCCCGAAAGTGATCGCCGGACCTGCAAGGACCCACGCCGCACCCGCTAAAAGCGGGGCGTCGGC > 2:1723194/1‑150 CTGCCTGTGCTGCCTGTCGACCAGCAACCCGCTGTTCTGGTGCATTCGCCCCGGCACTGCTGGCCGTCGATCAACCCCCGTGCCTCCCCGAAAGTGATCGCCTGACCTGCAAGGACCCAGGCCGCACCCGCTAAAAGCGGGGCGTCGGCC > 1:2111677/1‑150 CTGCCTGTGCTGCCTGTCGACCAGCAACCCGCTGTTCTGGTGCATTCGCCCCGGCACTGCTGGCCGTCGATCAACCCCCGTGCCTCCCCGAAAGTGATCGCCTGACCTGCAAGGACCCAGGCCGCACCCGCTAAAAGCGGGGCGTCGGCC > 1:576268/1‑150 CTGGCCGTCGATCAACCCCCGTGCCTCCCCGAAAGTGATCGCCTGACCTGCAAGGACCCAGGCCGCACCCGCTAAAAGCGGGGCGTCGG > 1:2721324/1‑89 CTGGCCGTCGATCAACCCCCGTGCCTCCCCGAAAGTGATCGCCTGACCTGCAAGGACCCAGGCCGCACCCGCTAAAAGCGGGGCGTCGG < 2:2721324/89‑1 ACCCAGGCCGCACCCGCTAAAAGCGGGGCGTCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACA > 1:405804/1‑150 CCAGGCCGCACCCGCTAAAAGCGGGGCGTCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGATGGTAGAAAGGCAGCACAtg > 2:2951778/1‑148 CCAGGCCGCACCCGCTAAAAGCGGGGCGTCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTT < 2:2935947/128‑1 CCAGGCCGCACCCGCTAAAAGCGGGGCGTCGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTT > 1:2935947/1‑128 AGGCCGCACCCGCTAAAAGCGGGG‑‑‑CGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGG > 2:22468/1‑150 AGGCCGCACCCGCTAAAAGCGGGG‑‑‑CGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGG > 1:2760269/1‑99 AGGCCGCACCCGCTAAAAGCGGGG‑‑‑CGGCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGG < 2:2760269/99‑1 GCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAATCAAAGAGGCA > 1:1689909/1‑150 GCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGA < 2:1250573/77‑1 GCCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGA > 1:1250573/1‑77 CCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGA < 2:1977390/37‑1 CCTGGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGA > 1:1977390/1‑37 GGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGACAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAATCAAAGAGGCAGGCA > 2:1048221/1‑150 CCCTGCCTGTGCTGCCTGTCGACCAGCAACCCGCTGTTCTGGTGCATTCGCCCCGGCACTGCTGGCCGTCGATCAACCCCCGTGCCTCCCCGAAAGTGATCGCCTGACCTGCAAGGACCCAGGCCGCACCCGCTAAAAGCGGGGCGTCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3775173‑3775020‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctgGGTCCTTGCAGGTCAGGCGATCACTTTCGGGGAGGCACGGGGGTTGATCGACGGCCAGCAGTGCCGGGGCGAATGCACCAGAACAGCGGGTTGCTGGTCGACAGGCAGCACAGGCAGGGCAAAGGCGGCCAGAATCAAAGAGGCAGGCA > NC_002947/3775055‑3775203 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |