| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4901771 = | 107 (0.930) | 7 (0.060) | 7/230 | NT | 6.7% | coding (1190/1533 nt) | PP_4309 | NCS1 family transporter |
| ? | NC_002947 | 4901797 = | 94 (0.870) | coding (1216/1533 nt) | PP_4309 | NCS1 family transporter | |||||
GGCCACGGCGCGCAGGTTGATGCCCTTGCTGTAGTGATAGGCGCCGGCCGGGTGCTCGGTATACAGCTCCGGCACGTTGATGCAGCCTTTGCGCAGCAACCAGTAGTCGGACATGATCACGCCGTACAGCGGGCCTAGCAGGGCGCCCAGGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4901925‑4901771‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcccgCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAGGCTGCATCAACGTGCCGGAGCTGTATACCGAGCACCCGGCCGGCGCCTATCACTACAGCAAGGGCATCAACCTGCGCGCCGTGGCCGCCTTCGTGCCGGCCGCAC > NC_002947/4901797‑4901944 GGCTACGGCGCGCAGGTTGATGCCCTTGCTGGAGTGGTAGGCGTTGGCCGGGTGCTCGGTATACATCTCCGGCACGTTGATGCAGCCTTTGCGCAGCAACCAGTAGTCGGACATGATCACGCCGGACGCCGGGCCTAGCAGAGCGCCCAG > 2:621347/1‑150 CCACGGCGCGCAGGTTGATGCCCTTGCTGTAGTGATAGGCGCCGGCCGGGTGCTCGGTATACAGCTCCGGCACGTTGATGCAGCCTTTGCGCAGCAACCAGTAGTCGGACATGATCACGCCGTACAGCGGGCCTAGCAGGGCGCCCAGGC > 1:266999/1‑150 CCACGGCGCGCAGGTTGATGCCCTTGCTGTAGTGATAGGCGCCGGCCGGGTGCTCGGTATACAGCTCCGGCACGTTGATGCAGCCTTTGCGCAGCAACCAGTAGTCGGACATGATCACGCCGTACAGCGGGCCTAGCAGGGCGCCCAGGC < 1:545099/150‑1 CACGGCGCGCAGGTTGATGCCCTTGCTGTAGTGATAGGCGCCGGCCGGGTGCTCGGTATACAGCTCCGGCACGTTGATGCAGCCTTTGCGCAGCAACCAGTAGTCGGACATGATCACGCCGTACAGCGGGCCTAGCAGGGCGCCCAGGCC > 2:627202/1‑150 ACGGCGCGCAGGTTGATGCCCTTGCTGTAGTGATAGGCGCCGGCCGGGTGCTCGGTATACAGCTCCGGCACGTTGATGCAGCCTTTGCGCAGCAACCAGTAGTCGGACATGATCACGCCGTACAGCGGGCCTAGCAGGGCGCCCAGGCCC < 1:2148337/150‑1 ACGGCGCGCAGGTTGATGCCCTTGCTGTAGTGATAGGCGCCGGCCGGGTGCTCGGTATACAGCTCCGGCACGTTGATGCAGCCTTTGCGCAGCAACCAGTAGTCGGACATGATCACGCCGTACAGCGGGCCTAGCAGGGCGCCCAGGCCC < 2:1536191/150‑1 CAGGTTGATGCCCTTGCTGTAGTGATAGGCGCCGGCCGGGTGCTCGGTATACAGCTCCGGCACGTTGATGCAGCCTTTGCGCAGCAACCAGTAGTCGGACATGATCACGCCGTACAGCGGGCCTAGCAGGGCGCCCA < 2:776985/137‑1 CAGGTTGATGCCCTTGCTGTAGTGATAGGCGCCGGCCGGGTGCTCGGTATACAGCTCCGGCACGTTGATGCAGCCTTTGCGCAGCAACCAGTAGTCGGACATGATCACGCCGTACAGCGGGCCTAGCAGGGCGCCCA > 1:776985/1‑137 TTGCTGTAGTGATAGGCGCCGGCCGGGTGCTCGGTATACAGCTCCGGCACGTTGATGCAGCCTTTGCGCAGCAACCAGTAGTCGGACATGATCACGCCGTACAGCGGGCCTAGCAGGGCGCCCAGGC > 2:98116/1‑127 TTGCTGTAGTGATAGGCGCCGGCCGGGTGCTCGGTATACAGCTCCGGCACGTTGATGCAGCCTTTGCGCAGCAACCAGTAGTCGGACATGATCACGCCGTACAGCGGGCCTAGCAGGGCGCCCAGGC < 1:98116/127‑1 GCGCCGGCCGGGTGCTCGGTATACAGCTCCGGCACGTTGATGCAGCCTTTGCGCAGCAACCAGTAGTCGGACATGATCACGCCGTACAGCGGGCCTGGGCGCCCTGCTAGGCCCGCTGTACGGCGTGATC < 2:893441/130‑1 GCGCCGGCCGGGTGCTCGGTATACAGCTCCGGCACGTTGATGCAGCCTTTGCGCAGCAACCAGTAGTCGGACATGATCACGCCGTACAGCGGGCCTGGGCGCCCTGCTAGGCCCGCTGTACGGCGTGATC > 1:893441/1‑130 CGGACATGATCACGCCGTACAGCGGGCCTAGCAGGGCGCCCAGGC > 1:1555516/1‑45 CGGACATGATCACGCCGTACAGCGGGCCTAGCAGGGCGCCCAGGC < 2:1555516/45‑1 CGCCGTACAGCGGGCCTAGCAGGGCGCCCAGGCCCGCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAGGCTGCATCAACGTGCCGGAGCTGTATACCGAGCACCCGGCCGGCGCCTATCACTACAGCAAGGGCATCAAC > 1:737668/1‑150 TACAGCGGGCCTAGCAGGGCGCCCAGGCCCGCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAG < 2:2019164/74‑1 TACAGCGGGCCTAGCAGGGCGCCCAGGCCCGCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAG > 1:2019164/1‑74 CAGCGGGCCTAGCAGGGCGCCCAGGCCCGCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAGGCTGCATCAACGTGCCGGAGCTGTATACCGAGCACCCGGCCGGCGCCTATCACTACAGCAAGGGCATCAAC > 1:654708/1‑143 CAGCGGGCCTAGCAGGGCGCCCAGGCCCGCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAGGCTGCATCAACGTGCCGGAGCTGTATACCGAGCACCCGGCCGGCGCCTATCACTACAGCAAGGGCATCAAC < 2:654708/143‑1 GCCCGCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAGGC < 1:896223/50‑1 GCCCGCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAGGC > 2:896223/1‑50 CCCGCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAGGCTGCATCAACGTGCCGGAGCTGTATACCGAGCACCCGGCCGGCGCCTATCACTACAGCAAGGGCATCAACCTGCGCGCCGTGGCCGCCTTCGT < 2:2818885/141‑1 CCCGCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAGGCTGCATCAACGTGCCGGAGCTGTATACCGAGCACCCGGCCGGCGCCTATCACTACAGCAAGGGCATCAACCTGCGCGCCGTGGCCGCCTTCGT > 1:2818885/1‑141 CCCGCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAGGCTGCATCAACGTGCCGGAGCTGTATACCGAGCACCCGGCCGGCGCCTATCACTACAGCAAGGGCATCAACCTGCGCGCCGTGACCGCCTTCGTGCCGGCCGC > 1:567773/1‑150 CCGCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAGGCTGCATCAACGTGCCGGAGCTGTATACCGAGCACCCGGCCGGCGCCTATCACTACAGCAAGGGCATCAACCTGCGCGCCGTGGCCGCCTTCGTGCCGGCCGCA > 2:104102/1‑150 CCGCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAGGCTGCATCAACGTGCCGGAGCTGTATACCGAGCACCCGGCCGGCGCCTATCACTACAGCAAG < 2:1112334/108‑1 CCGCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAGGCTGCATCAACGTGCCGGAGCTGTATACCGAGCACCCGGCCGGCGCCTATCACTACAGCAAG > 1:1112334/1‑108 CGCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAGGCTGCATCAACGTGCCGGAGCTGTATACCGAGCACCCGGCCGGCGCCTATCACTACAGCAAGGGCATCAACCTGCGCGCCGTGGCCGCCTTCGTGCCGGCCGCAC < 2:2707861/150‑1 GGCCACGGCGCGCAGGTTGATGCCCTTGCTGTAGTGATAGGCGCCGGCCGGGTGCTCGGTATACAGCTCCGGCACGTTGATGCAGCCTTTGCGCAGCAACCAGTAGTCGGACATGATCACGCCGTACAGCGGGCCTAGCAGGGCGCCCAGGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4901925‑4901771‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcccgCTGTACGGCGTGATCATGTCCGACTACTGGTTGCTGCGCAAAGGCTGCATCAACGTGCCGGAGCTGTATACCGAGCACCCGGCCGGCGCCTATCACTACAGCAAGGGCATCAACCTGCGCGCCGTGGCCGCCTTCGTGCCGGCCGCAC > NC_002947/4901797‑4901944 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |