New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5480705 =	121 (1.060)	6 (0.050)	6/236	NT	5.0%	coding (146/1356 nt)	PP_4819	hypothetical protein
	?	NC_002947	5480748 =	110 (0.990)					coding (189/1356 nt)	PP_4819	hypothetical protein

CGTCCAGCGCCTGGGCAGTCAGCGCCCAGTCCTGGTCAGGTGGGGTGCCGCGTACGCTGGTGGCAGGCTCTTGCGCCGGCTCGGCCAGCGGCTCGGCAGGCACTGCAGGTACCGGTGCCGGCACCACGGGGGCGCTGGTGGTGGCGGCG‑CGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5480857‑5480705 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtACCTGCAGTGCCTGCCGAGCCGCTGGCCGAGCCGGCGCAAGAGCCTGCCACCAGCGTACGCGGCACCCCACCTGACCAGGACTGGGCGCTGACTGCCCAGGCGCTGGACGAGCTCGACCTCGACAAGGAACTGGAGCGCCTGGAGCGT  >  NC_002947/5480748‑5480895                                                                                                                                                                                                                                                                                                                CGTCCAGCGCCTGGGCAGTCAGCGCCCAGTCCTGGTCAGGTGGGGTGCCGCGTACGCTGGTGGCAGGCTCTTGCGCCGGCTCGGCCAGCGGCTCGGCAGGCACTGCAGGTACCGGTGCCGGCACCACGGGGGCGCTGGTGGTGGCGGCG‑C                                                                                                                                                         <  1:682261/150‑1  GTCCAGCGCCTGGGCAGTCAGCGCCCAGTCCTGGTCAGGTGGGGTGCCGCGTACGCTGGTGGCAGGCTCTTGCGCCGGCTCGGCCAGCGGCTCGGCAGGCACTGCAGGTACCGGTGCCGGCACCACGGGGGCGCTGGTGGTGGCGGCG‑CG                                                                                                                                                        >  1:1097763/1‑150  GTCCAGCGCCTGGGCAGTCAGCGCCCAGTCCTGGTCAGGTGGGGTGCCGCGTACGCTGGTGGCAGGCTCTTGCGCCGGCTCGGCCAGCGGCTCGGCAGGCACTGCAGGTACCGGTGCCGGCACCACGGGGGCGCTGGTGGTGGCGGCG‑CG                                                                                                                                                        <  1:1610566/150‑1  GTCCAGCGCCTGGGCAGTCAGCGCCCAGTCCTGGTCAGGTGGGGTGCCGCGTACGCTGGTGGCAGGCTCTTGCGCCGGCTCGGCCAGCGGCTCGGCAGGCACTGCAGGTACCGGTGCCGGCACCACGGGGGCGCTGGTGGTGGCGGCG‑CG                                                                                                                                                        <  1:278009/150‑1   TCCAGCGCCTGGGCAGTCAGCGCCCAGTCCTGGTCAGGTGGGGTGCCGCGTACGCTGGTGGCAGGCTCTTGCGCCGGCTCGGCCAGCGGCTCGGCAGGCACTGCAGGTACCGGTGCCGGCACCACGGGGGCGCTGGTGGTGGCGGCG‑CGG                                                                                                                                                       <  1:2019632/150‑1    CCAGCGCCTGGGCAGTCAGCGCCCAGTCCTGGTCAGGTGGGGTGCCGCGTACGCTGGTGGCAGGCTCTTGCGCCGGCTCGGCCAGCGGCTCGGCAGGCACTGCAGGTACCGGTGCCGGCACCACGGGGGCGCTGGTGGTGGCGGCG‑CGGT                                                                                                                                                      >  2:2515409/1‑150    CCAGCGCCTGGGCAGTCAGCGCCCAGTCATGGTCAGGTGGGGTGCCGCGTACGCTGGTGGCAGGCTCTTGCGCCGGCTCGGCCAGCGGCTCGCCAGGCACTCCAGGTACCGGTGCCGGCACCACGGGGGCGCTGGTGGTGGCGGCG‑CGGT                                                                                                                                                      >  1:1272444/1‑150      AGCGCCTGGGCAGTCAGCGCCCAGTCCTGGTCAGGTGGGGTGCCGCGTACGCTGGTGGCAGGCTCTTGCGCCGGCTCGGCCAGCGGCTCGGCAGGCACTGCAGGTACCGGTGCCGGCACCACGGGGGCGCTGGTGGTGGCGGCG‑Ccggta                                                                                                                                                    <  2:2746636/150‑6                                                                                                  AGGCACTGCAGGTACCGGTGCCGGCACCACGGGGGCGCTGGTGGTGGCGGCG‑CGGTACCTGCAGTGCCTGCCGAGCCGCTGGCCGAGCCGGCGCAAGAGCCTGCCACCAGCGTACGCGGCACCCCACCTGACCAGGACTGGGCGCT                                                            >  2:851093/1‑146                                                                                                  AGGCACTGCAGGTACCGGTGCCGGCACCACGGGGGCGCTGGTGGTGGCGGCG‑CGGTACCTGCAGTGCCTGCCGAGCCGCTGGCCGAGCCGGCGCAAGAGCCTGCCACCAGCGTACGCGGCACCCCACCTGACCAGGACTGGGCGCT                                                            <  1:851093/146‑1                                                                                                    GCACTGCATGTACCGGTGCCGGCACCACGGGGGCGCTGGTGGTGGC‑AC‑‑CGGTACCTGCAGTGCCTGCCGAGCCGCTGGCCGAGCCGGCGCAAGAGCCTGCCACCAGCGTACGCGGCACCCCACCTGACCAGGACTGGGCGCTGACTGCCC                                                    >  2:2422659/1‑150                                                                                                              TACCGGTGCCGGCACCACGGGGGCGCTGGTGGTGGCGGCG‑CGGTACCTGCAGTGCCTGCCGAGCCGCTGGCCGAGCCGGCGCAAGAGCCTGCCACCAGCGTACGC                                                                                         >  1:456842/1‑105                                                                                                              TACCGGTGCCGGCACCACGGGGGCGCTGGTGGTGGCGGCG‑CGGTACCTGCAGTGCCTGCCGAGCCGCTGGCCGAGCCGGCGCAAGAGCCTGCCACCAGCGTACGC                                                                                         <  2:456842/105‑1                                                                                                                 CGGTGCCGGCACCACGGGGGCGCTGGTGGTGGCGGCGCCGGTACCTGCAGTGCCTGCCGAGCCGCTGGCCGAGCCGGCGCAAGAGCCTGCCACCAGCGTACGCGGCACCCCACCTGACCAGGACTGGGCGCTGACTGCCCAGGCGCTGGA                                          >  2:1067850/1‑150                                                                                                                                                       CGGTACCTGCAGTGCCTGCCGAGCCGCTGGCCGAGCCGGCGCAAGAGCCTGCCACCAGCGTACGCGGCACCCCACCTGACCAGGACTGGGCGCTGA                                                          >  1:120992/1‑96                                                                                                                                                       CGGTACCTGCAGTGCCTGCCGAGCCGCTGGCCGAGCCGGCGCAAGAGCCTGCCACCAGCGTACGCGGCACCCCACCTGACCAGGACTGGGCGCTGA                                                          <  2:120992/96‑1                                                                                                                                                         GTACCTGCAGTGCCTGCCGAGCCGCTGGCCGAGCCGGCGCAAGAGCCTGCCACCAGCGTACGCGGCACCCCACCTGACCAGGACTGGGCGCTGACTGCCCAGGCGCTGGACGAGCTCGACCTCGACAAGGAACTGGAGCGCCTGGAGCGT  <  1:783822/150‑1                                                                                                                                                                                                                                                                                                                CGTCCAGCGCCTGGGCAGTCAGCGCCCAGTCCTGGTCAGGTGGGGTGCCGCGTACGCTGGTGGCAGGCTCTTGCGCCGGCTCGGCCAGCGGCTCGGCAGGCACTGCAGGTACCGGTGCCGGCACCACGGGGGCGCTGGTGGTGGCGGCG‑CGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5480857‑5480705 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtACCTGCAGTGCCTGCCGAGCCGCTGGCCGAGCCGGCGCAAGAGCCTGCCACCAGCGTACGCGGCACCCCACCTGACCAGGACTGGGCGCTGACTGCCCAGGCGCTGGACGAGCTCGACCTCGACAAGGAACTGGAGCGCCTGGAGCGT  >  NC_002947/5480748‑5480895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.