New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3974772 =	76 (0.660)	5 (0.050)	4/234	NT	5.9%	intergenic (‑256/‑85)	PP_3503/PP_3504	sigma‑54 dependent transcriptional regulator/hypothetical protein
	?	NC_002947	3974818 =	87 (0.790)					intergenic (‑302/‑39)	PP_3503/PP_3504	sigma‑54 dependent transcriptional regulator/hypothetical protein

CGAATCATTTTTTTACAAACCGCCACGGGAATTTTCGCACTTTATCGACATCACATGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCACGCCTTCGAACCTTTCC  >  NC_002947/3974624‑3974920                                                                                                                                                     |                                                                                                                                                      ggctcagttcaccagtaccgttgggtgcatcccaggctacgcactggaaaggttcgaaggcgtggtcggcaatcagcagtgcttcgttgacacggagcggggcattcatggttcggtctctctatggtcccaaacatcgaagtgaagtcc                                                                                                                                                      <  2:123469‑M1/2‑1 (MQ=255)  gctcagttcaccagtaccgttgggtgcatcccaggctacgcactggaaaggttcgaaggcgtggtcggcaatcagcagtgcttcgttgacacggagcggggcattcatggttcggtctctctatggtcccaaacatcgaagtgaagtCcg                                                                                                                                                     <  1:1397371‑M1/3‑1 (MQ=255)  gAATCATTTTTTTACAAACCGCCACGGGAATTTTCGCACTTTATCGACATCACATGGCGGCGCAGGTAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCcg                                                                                                                                                     >  2:475652/1‑150 (MQ=255)    aTCATTTTTTTACAAACCGCCGCGGGAATTTTCGCACTTTATCGACATCACATGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCcgcg                                                                                                                                                   <  1:1622344/150‑1 (MQ=255)     tCATTTTTTTACAAACCGCCACGGGAATTTTCGCACTTTATCGACATCACATGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCgcgc                                                                                                                                                  <  1:1440046/150‑1 (MQ=255)             cagtaccgttgggtgcatcccaggctacgcactggaaaggttcgaaggcgtggtcggcaatcagcagtgcttcgttgacacggagcggggcattcatggttcggtctctctatggtcccaaacatcgaagtgaagtCCGCGCTGCACTTc                                                                                                                                          <  1:2143619‑M1/14‑1 (MQ=255)                 aaaCCGCCACGGGAATTTTCGCACTTTATCGACATCACATGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCCCTACgaga                                                                                                                                      >  2:1705145/1‑150 (MQ=255)                      gCCACGGGAATTTTCGCACTTTATCGACATCACATGGCGGCGCAGGTAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAAt                                                                                                                                 <  1:475652/150‑1 (MQ=255)                      gCCACGGGAATTTTCGCACTTTATCGACATCACATGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAAt                                                                                                                                 <  2:1805548/150‑1 (MQ=255)                          cGGGAATTTTCGCACTTTATCGACATCACATGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAgg                                                                                                                             >  1:2061212/1‑150 (MQ=255)                           gggAATTTTCGCACTTTATCGACATCACATGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGc                                                                                                                            >  2:2521739/1‑150 (MQ=255)                           gggAATTTTCGCACTTTATCGACATCACATGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAAAGAGCATCAGTAGAAATAACGCCGCGCTGCACTTCGCGATCAATGAGGc                                                                                                                            >  2:1489118/1‑150 (MQ=255)                            ggAATTTTCGCACTTTATCGACATCACATGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCg                                                                                                                           >  1:480534/1‑150 (MQ=255)                                    cGCACTTTATCGACATCACAGGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGaa                                                                                                                   <  2:613480/150‑1 (MQ=255)                                       aCTTTATCGACATCACATGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCa                                                                                                                >  2:2627394/1‑150 (MQ=255)                                        cTTTATCGACATCACATGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCaa                                                                                                               >  1:2300282/1‑150 (MQ=255)                                         tttATCGACATCACATGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAAc                                                                                                              >  2:2631092/1‑150 (MQ=255)                                            ctggaaaggttcgaaggcgtggtcggcaatcagcagtgcttcgttgacacggagcggggcattcatggttcggtctctctatggtcccaaacatcgaagtgaagtCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAAcgcg                                                                                                           >  1:2893046‑M1/106‑150 (MQ=255)                                            ctggaaaggttcgaaggcgtggtcggcaatcagcagtgcttcgttgacacggagcggggcattcatggttcggtctctctatggtcccaaacatcgaagtgaagtCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAAcgcg                                                                                                           >  2:2143619‑M1/106‑150 (MQ=255)                                                   tCACATGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGAc                                                                                                                         >  2:1224878/1‑129 (MQ=255)                                                   tCACATGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGAc                                                                                                                         <  1:1224878/129‑1 (MQ=255)                                                     acaTGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGaa                                                                                                                   >  1:2407597/1‑133 (MQ=255)                                                     acaTGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGaa                                                                                                                   <  2:2407597/133‑1 (MQ=255)                                                      caTGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGactt                                                                                                      <  2:1841799/145‑1 (MQ=255)                                                      caTGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGactt                                                                                                      >  1:1841799/1‑145 (MQ=255)                                                       aTGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGacttcacttc                                                                                                >  1:410069/1‑150 (MQ=255)                                                                cAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTgg                                                                                       <  1:1937389/150‑1 (MQ=255)                                                                   gCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAg                                                                                                                  <  2:935820/120‑1 (MQ=255)                                                                   gCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAg                                                                                                                  >  1:935820/1‑120 (MQ=255)                                                                   gCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGAc                                                                                    >  2:1010241/1‑150 (MQ=255)                                                                    cAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGAcc                                                                                   <  2:2061212/150‑1 (MQ=255)                                                                    cAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGAcc                                                                                   >  1:202239/1‑150 (MQ=255)                                                                     aaGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCa                                                                                  >  1:3040275/1‑150 (MQ=255)                                                                     aaGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCa                                                                                  >  2:486143/1‑150 (MQ=255)                                                                        aaCAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑ag                                                                              <  1:1705145/150‑1 (MQ=255)                                                                         aCAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑aga                                                                             <  2:480534/150‑1 (MQ=255)                                                                           atcGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑agaga                                                                           <  2:2309044/148‑1 (MQ=255)                                                                                  aCCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGaa                                                                    >  1:2043608/1‑150 (MQ=255)                                                                                  aCCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCCGGTGTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGaa                                                                    <  1:2521739/150‑1 (MQ=255)                                                                                   ttcgttgacacggagcggggcattcatggttcggtctctctatggtcccaaacatcgaagtgaagtCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAg                                                                                                                  >  1:162561‑M1/67‑104 (MQ=255)                                                                                   ttcgttgacacggagcggggcattcatggttcggtctctctatggtcccaaacatcgaagtgaagtCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAg                                                                                                                  <  2:162561‑M1/38‑1 (MQ=255)                                                                                      tGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGaa                                                                                                                   >  2:2989172/1‑100 (MQ=255)                                                                                      tGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGaa                                                                                                                   <  1:2989172/100‑1 (MQ=255)                                                                                               tttACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGAc                                                                        >  1:225554/1‑133 (MQ=255)                                                                                               tttACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGAc                                                                        <  2:225554/133‑1 (MQ=255)                                                                                                ttACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTgg                                                                                       >  1:1358047/1‑118 (MQ=255)                                                                                                ttACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTgg                                                                                       <  2:1358047/118‑1 (MQ=255)                                                                                                    aGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTcc                                                  >  2:133952/1‑150 (MQ=255)                                                                                                    aGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTcc                                                  <  2:2300282/150‑1 (MQ=255)                                                                                                      ccAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGa                                                                                              >  1:2049400/1‑105 (MQ=255)                                                                                                      ccAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGa                                                                                              <  2:2049400/105‑1 (MQ=255)                                                                                                      ccAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCgt                                                >  1:239809/1‑150 (MQ=255)                                                                                                      ccAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCgt                                                >  1:1714751/1‑150 (MQ=255)                                                                                                            tgtgACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAAc                                          >  2:1308241/1‑150 (MQ=255)                                                                                                             gtgACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGaa                                                                                                                   >  2:2709715/1‑77 (MQ=255)                                                                                                             gtgACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGaa                                                                                                                   <  1:2709715/77‑1 (MQ=255)                                                                                                                  ttACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTAACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCa                                    >  2:2715432/1‑150 (MQ=255)                                                                                                                     cccACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCActg                                 >  1:1347672/1‑150 (MQ=255)                                                                                                                      ccACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTg                                                                                        >  1:1864441/1‑95 (MQ=255)                                                                                                                      ccACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTg                                                                                        <  2:1864441/95‑1 (MQ=255)                                                                                                                       cACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTggg                                                                                      >  2:1583286/1‑96 (MQ=255)                                                                                                                       cACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTggg                                                                                      <  1:1583286/96‑1 (MQ=255)                                                                                                                       cACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGAc                                                                        >  1:2932990/1‑109 (MQ=255)                                                                                                                       cACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGAc                                                                        <  2:2932990/109‑1 (MQ=255)                                                                                                                        aCGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTcc                                                  >  1:1555059/1‑130 (MQ=255)                                                                                                                        aCGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTcc                                                  <  2:1555059/130‑1 (MQ=255)                                                                                                                        aCGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCActgc                                >  1:2303199/1‑148 (MQ=255)                                                                                                                        aCGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCActgc                                <  2:2303199/148‑1 (MQ=255)                                                                                                                            acaacGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTg                          >  2:2363910/1‑150 (MQ=255)                                                                                                                            acaacGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTg                          <  2:239809/150‑1 (MQ=255)                                                                                                                             caacGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGc                         <  1:486143/150‑1 (MQ=255)                                                                                                                               acGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCg                       >  2:1360151/1‑150 (MQ=255)                                                                                                                                cGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTg                                                                                        >  1:791172/1‑85 (MQ=255)                                                                                                                                cGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTg                                                                                        <  2:791172/85‑1 (MQ=255)                                                                                                                                     accAGTAGACATAACCTCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGCGACCGAACCATGAATGCCCCGCTCCGTGGCAACGAAGCACTACTCATTGCCGCCCACg                 >  2:359108/3‑150 (MQ=255)                                                                                                                                     aTCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCACg                 >  1:2312889/1‑150 (MQ=255)                                                                                                                                         gTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCACGCCtt             >  1:1074407/1‑150 (MQ=255)                                                                                                                                         gTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCAACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGATCAT‑AGAGCGACTCAAACAATAGTCCCCCGCTCGTTGTCAACGAAGCACTGCTGATTGCCGACCACGCCtt             <  1:2363910/150‑1 (MQ=255)                                                                                                                                          tAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGAGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAANGCCNCGCTNCGTGTCAACGAAGCACTGCTGATTGCCGACCACGCCTTc            <  1:2631092/150‑1 (MQ=255)                                                                                                                                            gACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCACGCCTTCGa          >  2:2598496/1‑150 (MQ=255)                                                                                                                                               aTAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGCAGCAACGCGGACATAACTTCAATGCTTGAGCAGATCCGAG‑GAAAGCACGAACAAAGCGCCGCGCCCTGTCAACGAAGCACTGCTGATTGCCGACCACGCCTTCGAAcc       >  2:2648850/1‑150 (MQ=255)                                                                                                                                               aTAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCAt                                                                <  2:2274456/93‑1 (MQ=255)                                                                                                                                               aTAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCAt                                                                >  1:2274456/1‑93 (MQ=255)                                                                                                                                               aTAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGGTTGCCGACCACGCCTTCGAAcc       >  2:996276/1‑150 (MQ=255)                                                                                                                                               aTAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCACGCCTTCGAAcc       >  1:1677531/1‑150 (MQ=255)                                                                                                                                                 aaCCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCACGCCTTCGAACCtt     >  2:1140327/1‑150 (MQ=255)                                                                                                                                                 aaCCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCACGCCTTCGAACCtt     >  1:815796/1‑150 (MQ=255)                                                                                                                                                  aCCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCACGCCTTCGAACCttt    >  1:123469/1‑150 (MQ=255)                                                                                                                                                   ccccGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGAc                     <  2:113492/132‑1 (MQ=255)                                                                                                                                                   ccccGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGAc                     >  1:113492/1‑132 (MQ=255)                                                                                                                                                    cccGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGAc                     >  2:1092141/1‑131 (MQ=255)                                                                                                                                                    cccGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGAc                     <  1:1092141/131‑1 (MQ=255)                                                                                                                                                    cccGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCACGCCTTCGAACCTTTcc  >  2:952996/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CGAATCATTTTTTTACAAACCGCCACGGGAATTTTCGCACTTTATCGACATCACATGGCGGCGCAGGCAAGAACAGCGTCGACCCTGAAAAAAATTTACAGCCAATGTGTGACTTACCCACGAACAACGAGCATCAGTAGACATAACCCCGCGCTGCACTTCGCGATCAATGAGGCGACTTTGAAGCAACGCGGACTTCACTTCGATGTTTGGGACCAT‑AGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCACGCCTTCGAACCTTTCC  >  NC_002947/3974624‑3974920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.