New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4586100	33 (0.550)	9 (0.210)	9/192	3.6	30.2%	intergenic (+139/+78)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586128	18 (0.420)					intergenic (+167/+50)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
Rejected: Coverage evenness skew score above cutoff.

GAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGT  >  NC_002947/4585952‑4586249                                                                                                                                                     |                                                                                                                                                       gAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGa                                                                                                                                                       <  2:352465/150‑1 (MQ=255)     gCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAggggcagc                                                                                                                                                   >  2:1059556/1‑145 (MQ=255)       ttAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAggggcagcgc                                                                                                                                                 >  1:613322/1‑143 (MQ=255)           gggTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGc                                                                                                                                            <  1:1140533/150‑1 (MQ=255)           gggTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGc                                                                                                                                            >  1:300335/1‑150 (MQ=255)             gTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCt                                                                                                                                          <  1:1318852/150‑1 (MQ=255)             gTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCt                                                                                                                                          <  1:352667/150‑1 (MQ=255)                      ggCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATgcgg                                                                                                                                 <  2:1424747/150‑1 (MQ=255)                       gCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATgcggc                                                                                                                                <  1:585161/150‑1 (MQ=255)                            ggCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGc                                                                                                                           <  1:296520/150‑1 (MQ=255)                               gTGAACAGCTGATCTGCGGTGCTCCATTGCAAGGTTGAGAATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTCCCTGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGcccc                                                                                                                        <  2:308470/150‑1 (MQ=255)                                  aaCAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAggggc                                                                                                                                                      >  2:589517/1‑116 (MQ=255)                                  aaCAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAggggc                                                                                                                                                      <  1:589517/118‑3 (MQ=255)                                   aCAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGt                                                                                                                    <  2:300335/150‑1 (MQ=255)                                    cAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTa                                                                                                                   <  1:710086/150‑1 (MQ=255)                                     aGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAg                                                                                                                  <  2:546731/150‑1 (MQ=255)                                             tGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGt                                                                                                          <  1:374611/150‑1 (MQ=255)                                              gcgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGtt                                                                                                         <  1:904388/150‑1 (MQ=255)                                                    ctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCcg                                                                                                   <  2:651959/150‑1 (MQ=255)                                                                                                                 gccggccTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCgg                                                                                                            >  1:834010/1‑80 (MQ=255)                                                                                                                 gccggccTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCgg                                                                                                            <  2:834010/80‑1 (MQ=255)                                                                                                                                  tAAACCCGCTCCTACCAGGGACCGTAGGCGG‑CTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGa                     >  1:1139254/1‑150 (MQ=255)                                                                                                                                      cccGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACtt                 >  1:1162918/1‑150 (MQ=255)                                                                                                                                       ccGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTc                >  1:73702/1‑150 (MQ=255)                                                                                                                                       ccGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTc                >  1:1072633/1‑150 (MQ=255)                                                                                                                                           tCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCa            >  2:1099632/1‑150 (MQ=255)                                                                                                                                             cTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAggccggc                                                                                      >  1:962489/1‑74 (MQ=255)                                                                                                                                             cTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAggccggc                                                                                      <  2:962489/74‑1 (MQ=255)                                                                                                                                              tACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCt         >  2:1276664/1‑150 (MQ=255)                                                                                                                                               aCCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCTGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCtt        >  2:253390/1‑150 (MQ=255)                                                                                                                                               aCCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTcc                                              >  2:1403504/1‑112 (MQ=255)                                                                                                                                               aCCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTcc                                              <  1:1403504/112‑1 (MQ=255)                                                                                                                                                ccAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTg       >  1:295432/1‑150 (MQ=255)                                                                                                                                                  aGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAg                                                         <  1:40335/98‑1 (MQ=255)                                                                                                                                                  aGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAg                                                         >  2:40335/1‑98 (MQ=255)                                                                                                                                                  aGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGcc     >  2:1288209/1‑150 (MQ=255)                                                                                                                                                     gACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcggt  >  2:1337951/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                       GAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGT  >  NC_002947/4585952‑4586249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.