New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4586100	33 (0.550)	9 (0.210)	9/192	3.6	30.2%	intergenic (+139/+78)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586128	18 (0.420)					intergenic (+167/+50)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
Rejected: Coverage evenness skew score above cutoff.

GGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAA  >  NC_002947/4585979‑4586277                                                                                                                                                       |                                                                                                                                                      ggCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGc                                                                                                                                                       <  1:296520/150‑1 (MQ=255)    gTGAACAGCTGATCTGCGGTGCTCCATTGCAAGGTTGAGAATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTCCCTGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGcccc                                                                                                                                                    <  2:308470/150‑1 (MQ=255)        aCAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGt                                                                                                                                                <  2:300335/150‑1 (MQ=255)         cAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTa                                                                                                                                               <  1:710086/150‑1 (MQ=255)          aGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAg                                                                                                                                              <  2:546731/150‑1 (MQ=255)                  tGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGt                                                                                                                                      <  1:374611/150‑1 (MQ=255)                   gcgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGtt                                                                                                                                     <  1:904388/150‑1 (MQ=255)                         ctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCcg                                                                                                                               <  2:651959/150‑1 (MQ=255)                                                                                      gccggccTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCgg                                                                                                                                        <  2:834010/80‑1 (MQ=255)                                                                                      gccggccTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCgg                                                                                                                                        >  1:834010/1‑80 (MQ=255)                                                                                                       tAAACCCGCTCCTACCAGGGACCGTAGGCGG‑CTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGa                                                 >  1:1139254/1‑150 (MQ=255)                                                                                                           cccGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACtt                                             >  1:1162918/1‑150 (MQ=255)                                                                                                            ccGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTc                                            >  1:73702/1‑150 (MQ=255)                                                                                                            ccGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGCCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTc                                            >  1:1072633/1‑150 (MQ=255)                                                                                                                tCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCa                                        >  2:1099632/1‑150 (MQ=255)                                                                                                                  cTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAggccggc                                                                                                                  <  2:962489/74‑1 (MQ=255)                                                                                                                  cTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAggccggc                                                                                                                  >  1:962489/1‑74 (MQ=255)                                                                                                                   tACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCt                                     >  2:1276664/1‑150 (MQ=255)                                                                                                                    aCCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCTGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCtt                                    >  2:253390/1‑150 (MQ=255)                                                                                                                    aCCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTcc                                                                          >  2:1403504/1‑112 (MQ=255)                                                                                                                    aCCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTcc                                                                          <  1:1403504/112‑1 (MQ=255)                                                                                                                     ccAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTg                                   >  1:295432/1‑150 (MQ=255)                                                                                                                       aGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAg                                                                                     <  1:40335/98‑1 (MQ=255)                                                                                                                       aGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAg                                                                                     >  2:40335/1‑98 (MQ=255)                                                                                                                       aGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGcc                                 >  2:1288209/1‑150 (MQ=255)                                                                                                                          gACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcggt                              >  2:1337951/1‑150 (MQ=255)                                                                                                                           aCCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcggtc                             >  1:720040/1‑150 (MQ=255)                                                                                                                            ccGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcggtca                            >  1:1151887/1‑150 (MQ=255)                                                                                                                             cGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagag                                                                                                                        >  2:1095835/1‑57 (MQ=255)                                                                                                                             cGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAagag                                                                                                                        <  1:1095835/57‑1 (MQ=255)                                                                                                                             cGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGACCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCcggtcac                           <  2:1072633/150‑1 (MQ=255)                                                                                                                                                       ccccTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACaaaa  <  1:1337951/150‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                      GGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCCGCGCCAGCACATCAACCCGCAGATGCAGCCGCAATCTCCGCCACACTGATCTCACGCATGCGGAACTTCTGCACCTTGCCGGTCACGGTCATCGGGTACTCGTCGACAAAA  >  NC_002947/4585979‑4586277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.