New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5652989 =	11 (0.650)	3 (0.210)	3/236	1.7	28.1%	intergenic (‑39/+122)	PP_4961/PP_4962	lipoprotein/hypothetical protein
	?	NC_002947	5653045 =	6 (0.420)					intergenic (‑95/+66)	PP_4961/PP_4962	lipoprotein/hypothetical protein

CGAAGACCACCAGCGCAAGGCGCCGGGTTGCCCTTGATCGGGTAATAGGCAACCTGAACGTTGATTTGTGGTCTTGAAGAAGGGGCCGCTGTGCGGCCCTTCGCGGGCTCGCCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5653147‑5652989 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcgagcccgCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAGGGCAACCCGGCGCCTTGCGCTGGTGGTCTTCGTCGTACTTTTCCAGGCCTTCCGGGCCC  >  NC_002947/5653045‑5653174                                                                                                                                                                                                                                                                                                   CGAAGACCACCAGCGCAAGGCGCCGGGTTGCCCTTGATCGGGTAATAGGCAACCTGAACGTTGATTTGTGGTCTTGAAGAAGGGGCCGCTGTGCGGCCCTTCGCGGGCTCGCCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGG                                                                                                                                             <  2:113333/150‑1    AGACCACCAGCGCAAGGCGCCGGGTTGCCCTTGATCGGGTAATAGGCAACCTGAACGTTGATTTGTGGTCTTGAAGAAGGGGCCGCTGTGCGGCCCTTCGCGGGCTCGCCCGCTTCCACAGAGACTGCACTGTACCTGTGGGAGCGGGCG                                                                                                                                          <  1:99632/150‑1     GACCACCAGCGCAAGGCGCCGGGTTGCCCTTGATCGGGTAATAGGCAACCTGAACGTTGATTTGTGGTCTTGAAGAAGGGGCTGCTGTGCGGCCCTTCGCGGGCTCGCCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGA                                                                                                                                         <  1:58029/150‑1                                                                                                                 CCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAG                                                             <  1:4705/118‑1                                                                                                                 CCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAG                                                             >  2:4705/1‑118                                                                                                                       CCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCGCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAGGGCAACCCGGCGCCTTGCGCTGGTGGTCTTCGTCGTAC                       >  2:208218/1‑150                                                                                                                                            TGTGGGAGCGGGCGAGCCCGCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAGGGCAACCCGGCGCCTTGCGCTGGTGGTCTTCGTCGTACTTTTCCAGGCCTTCCGGGCCC  <  1:343621/150‑1                                                                                                                                                                                                                                                                                                   CGAAGACCACCAGCGCAAGGCGCCGGGTTGCCCTTGATCGGGTAATAGGCAACCTGAACGTTGATTTGTGGTCTTGAAGAAGGGGCCGCTGTGCGGCCCTTCGCGGGCTCGCCCGCTCCCACAGAGACTGCACTGTACCTGTGGGAGCGGGCGAGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5653147‑5652989 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcgagcccgCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAGGGCAACCCGGCGCCTTGCGCTGGTGGTCTTCGTCGTACTTTTCCAGGCCTTCCGGGCCC  >  NC_002947/5653045‑5653174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.