New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5652989 =	11 (0.650)	3 (0.210)	3/236	1.7	28.1%	intergenic (‑39/+122)	PP_4961/PP_4962	lipoprotein/hypothetical protein
	?	NC_002947	5653045 =	6 (0.420)					intergenic (‑95/+66)	PP_4961/PP_4962	lipoprotein/hypothetical protein

GGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCACAGGTACAGTGCAGTCTCTGTGGGAGCGGGCGAGCCCGCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAGGGCAACCCGGCGCCTTGCGCTGGTGGTCTTCGTCGTACTTTTCCAGGCCTTCCGGGCCC  >  NC_002947/5652933‑5653174                                                                                                                 |                                                                                                                                  ggCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCACAGGTACAGTGCAGTCTCTGTGGGAGCGGGCGAGCCCGCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACaa                                                                                              >  1:348750/1‑150 (MQ=255)       aaGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCACAGGTACAGTGCAGTCTCTGTGGGAGCGGGCGAGCCCGCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAAc                                                                                        <  2:348750/150‑1 (MQ=255)                  ttcaGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCACAGGTACAGTGCAGTCTCTGTGGGAGCGGGCGAGCCCGCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGc                                                                             >  1:244153/1‑150 (MQ=255)                                           tgtgCAGCCCTTCTCGGGCCCGCCCGCTCCCGCAGGTACAGTGCAGTCTCTGTGGGAGCGGCCGAGCCCGCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCAAAAATCAACATTCAGGTCGCCCATTACCCGATCAAGCGCAACCCg                                                    >  1:98364/1‑150 (MQ=255)                                                              TCGCCCGCTCCCACAGGTACAGTGCAGTCTCTGTGGGAGCGGGCGAGCCCGCGAAGGGCCGCACAGCAGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAGGGCAACCCGGCGCCTTGCGCTGGTGGTc                                 <  1:58029‑M1/150‑1 (MQ=255)                                                               CGCCCGCTCCCACAGGTACAGTGCAGTCTCTGTGGAAGCGGGCGAGCCCGCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAGGGCAACCCGGCGCCTTGCGCTGGTGGTCt                                <  1:99632‑M1/150‑1 (MQ=255)                                                                  ccgctcccacagagactgcactgtacctgtgggagcgggcgagcccgCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAg                                                             <  1:4705‑M2/71‑1 (MQ=255)                                                                  ccgctcccacagagactgcactgtacctgtgggagcgggcgagcccgCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAg                                                             >  2:4705‑M2/48‑118 (MQ=255)                                                                  CCGCTCCCACAGGTACAGTGCAGTCTCTGTGGGAGCGGGCGAGCCCGCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAGGGCAACCCGGCGCCTTGCGCTGGTGGTCTtcg                             <  2:113333‑M1/150‑1 (MQ=255)                                                                        ccacagagactgcactgtacctgtgggagcgggcgagcccgCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAGGGCAACCCGGCGCCTTGCGCTGGTGGTCTTCGTCGTAc                       >  2:208218‑M2/42‑150 (MQ=255)                                                                              gTACAGTGCAGTCTCTGTGGGAGCGGGCGAGCCCGCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAGGGCAACCCGGCGCCTTGCGCTGGTGGTCTTCGTCGTACTTTTcc                 >  1:77195/1‑150 (MQ=255)                                                                                     gCAGTCTCTGTGGGAGCGGGCGAGCCCGCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAGGGCAACCCGGCGCCTTGCGCTGGTGGTCTTCGTCGTACTTTTCCAGGCCtt          >  1:98104/1‑150 (MQ=255)                                                                                             tgtgggagcgggcgagcccgCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAGGGCAACCCGGCGCCTTGCGCTGGTGGTCTTCGTCGTACTTTTCCAGGCCTTCCGGGccc  <  1:343621‑M2/130‑1 (MQ=255)                                                                                                                 |                                                                                                                                  GGCCAAAAGCGCTTTCATTCAGTTTCCTCGATTTGGGGCTGCTGTGCAGCCCTTCTCGGGCTCGCCCGCTCCCACAGGTACAGTGCAGTCTCTGTGGGAGCGGGCGAGCCCGCGAAGGGCCGCACAGCGGCCCCTTCTTCAAGACCACAAATCAACGTTCAGGTTGCCTATTACCCGATCAAGGGCAACCCGGCGCCTTGCGCTGGTGGTCTTCGTCGTACTTTTCCAGGCCTTCCGGGCCC  >  NC_002947/5652933‑5653174

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.