New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6097786	9 (0.530)	3 (0.190)	3/258	1.9	22.8%	coding (844/963 nt)	PP_5348	LysR family transcriptional regulator
	?	NC_002947	= 6097801	12 (0.760)					coding (859/963 nt)	PP_5348	LysR family transcriptional regulator

ATGCCCAGCGCGAATGCGTGATCGCCGGGCTGGGGATCGCCCTGTTGACCCGTCACGCCGTCAACCTGGAATTGGCTACCGGGATGCTGAAGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6097634‑6097786 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaaggccaCCGGTGACTGCCGCTTGGCCTTG  <  NC_002947/6097801‑6097779                                                                                                                                                                                  ATGCCCAGCGCGAATGCGTGATCGCCGGGCTGGGGATCGCCCTGTTGACCCGTCACGCCGTCAACCTGGAATTGTCTAGCGGGATGCTGAAGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGG                            <  1:155307/150‑1  TGCCCAGCGCGAATGCGTGATCGCCGGGCTGGGGATCGCCCTGTTGACCCGTCACGCCGTCAACCTGGAATTGGCTACCGGGATGCTGAAGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGC                           >  2:362022/1‑150                        GCCGGGCTGGGGATCGCCCTGTTGACCCGTCCCGCCGTCAACCTGGAATTGGCTACCGGGATGCTGAAGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCACCGGTGACTGCCGCTTGGCC     <  2:98524/150‑1                                                    GTCACGCCGTCAACCTGGAATTGGCTACCGGGATGCTGAAGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAA                              >  1:377463/1‑97                                                    GTCACGCCGTCAACCTGGAATTGGCTACCGGGATGCTGAAGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAA                              <  2:377463/97‑1                                                                                            GGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCACCGGTGACTGCCGCTTGGCCTTG  >  1:383906/1‑85                                                                                            GGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCACCGGTGACTGCCGCTTGGCCTTG  <  2:383906/85‑1                                                                                                                                                                                  ATGCCCAGCGCGAATGCGTGATCGCCGGGCTGGGGATCGCCCTGTTGACCCGTCACGCCGTCAACCTGGAATTGGCTACCGGGATGCTGAAGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6097634‑6097786 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaaggccaCCGGTGACTGCCGCTTGGCCTTG  <  NC_002947/6097801‑6097779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.