| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6097786 | 9 (0.530) | 3 (0.190) | 3/258 | 1.9 | 22.8% | coding (844/963 nt) | PP_5348 | LysR family transcriptional regulator |
| ? | NC_002947 | = 6097801 | 12 (0.760) | coding (859/963 nt) | PP_5348 | LysR family transcriptional regulator | |||||
GCCGGGCTGGGGATCGCCCTGTTGACCCGTCACGCCGTCAACCTGGAATTGGCTACCGGGATGCTGAAGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCAAGCGGCAGTCACCGGTGGCCTTGGCGTTTCTTGCATTCATACGCGGCGAACGTGCTCTTATCAGCGCGCTTGTTGAACGTTTTTCGGGGAAGTTGCCGCCGACGACTGCCATACCGTGAGTGCTTGCAGCTCGGGGTAGTCCGCC > NC_002947/6097657‑6097931 | gCCGGGCTGGGGATCGCCCTGTTGACCCGTCCCGCCGTCAACCTGGAATTGGCTACCGGGATGCTGAAGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCAccggtgactgccgcttggcc < 2:98524‑M1/150‑21 (MQ=255) aCGCCGTCAACCTGGAATTGGCTACCGGGATGCTGAAGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTATCTGGTGCGTGGTGCAGGCCAAGGCCAAGCGGCAGTCACCGGTGGCCTTGGCGTTTCTTGCATTCATACGCGGCGAAc < 1:278170/150‑1 (MQ=255) tCAACCTGGAATTGGCTACCGGGATGCTGAAGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCAAGCGGCAGTCACCGGTGGCCTTGGCGTTTCTTGCATTCATACGCGGCGAACGTGctc < 1:196692/150‑1 (MQ=255) gAATTGGCTACCGGGATGCTGAAGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCAAGCGGCAGTCACCGGTGGCCTTGGCGTTTCTTGCATTCATACGCGGCGAACGTGCTCTTATCAgc < 1:89136/150‑1 (MQ=255) tACCGGGATGCTGAAGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCAAGCGGCAGTCACCGGTGGCCTTGGCGTTTCTTGCATTCATACGCGGCGAACGTg > 1:262218/1‑131 (MQ=255) tACCGGGATGCTGAAGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCAAGCGGCAGTCACCGGTGGCCTTGGCGTTTCTTGCATTCATACGCGGCGAACGTg < 2:262218/131‑1 (MQ=255) aGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCAAGCGGCAGTCACCGGTGGCCTTGGCGTTTCTTGCATTCATACGCGGCGAACGTGCTCTTATCAGCGCGCTTGTTGAACGTTTTTCgg < 2:321536/150‑1 (MQ=255) ggAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCAccggtgactgccgcttggccttg > 1:383906‑M1/1‑62 (MQ=255) ggAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCAccggtgactgccgcttggccttg < 2:383906‑M1/85‑24 (MQ=255) gCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCAAGCGGCAGTCACCGGTGGCCTTGGCGTTTCTTGCATTCATACGCGGCGAACGTGCTCTTATCAGCGCGCTTGTTGAACGTTTTTCGGGGAAGTTGCCGCCgacgac > 1:183267/1‑150 (MQ=255) ccGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCAAGCGGCAGTCACCGGTGGCCTTGGCGTTTCTTGCATTCATACGCGGCGAACGTGCTCTTATCAGCGCGCTTGTTGAACGTTTTTCGGGGAAGTTGCCGCCGACGACTgtc > 2:40324/1‑148 (MQ=255) ccaaggccaagCGGCAGTCACCGGTGGCCTTGGCGTTTCTTGCATTCATACGCGGCGAACGTGCTCTTATCAGCGCGCTTGTTGAACGTTTTTCGGGGAAGTTGCCGCCGACGACTGCCATACCGTGAGTGCTTGCAGCTCGGGGGAGTc > 1:368460/1‑150 (MQ=255) caaggccaagCGGCAGTCACCGGtggccttggcctgcaccacgcaccagctacggtacagcggtagctcctcgaccggtaattcc > 1:383906‑M2/1‑23 (MQ=255) caaggccaagCGGCAGTCACCGGtggccttggcctgcaccacgcaccagctacggtacagcggtagctcctcgaccggtaattcc < 2:383906‑M2/85‑63 (MQ=255) ggccaagCGGCAGTCACCGGtggccttggcctgcaccacgcaccagctacggtacagcggtagctcctcgaccggtaattccttcagcatcccggtagccaattccaggttgacggcgggacgggtcaacagggcgatccccagcccggc < 2:98524‑M2/150‑131 (MQ=255) | GCCGGGCTGGGGATCGCCCTGTTGACCCGTCACGCCGTCAACCTGGAATTGGCTACCGGGATGCTGAAGGAATTACCGGTCGAGGAGCTACCGCTGTACCGTAGCTGGTGCGTGGTGCAGGCCAAGGCCAAGCGGCAGTCACCGGTGGCCTTGGCGTTTCTTGCATTCATACGCGGCGAACGTGCTCTTATCAGCGCGCTTGTTGAACGTTTTTCGGGGAAGTTGCCGCCGACGACTGCCATACCGTGAGTGCTTGCAGCTCGGGGTAGTCCGCC > NC_002947/6097657‑6097931 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |