New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 316022	17 (1.000)	5 (0.310)	5/268	1.4	30.9%	intergenic (+34/+49)	cysQ/PP_0262	3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein
	?	NC_002947	336297 =	6 (0.370)					intergenic (+142/+251)	PP_0278/PP_0279	hypothetical protein/hypothetical protein

TTCCGGTATCCGCCGCGCGAGTCGCTGCTTAACCCGTACTTCCTGGCGTTGCCGGTAAATGCTGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/315893‑316022 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcgGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGG  >  NC_002947/336297‑336445                                                                                                                                                                                                                                                                                         TTCCGGTATCCGCCGCGCGAGTCGCTGCTTAACCCGTACTTCCTGGCGTTGCCGGTAAATGCTGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGGC                                                                                                                                   <  1:242655/150‑1               GCGCGAGTCGCTGCTTAACCCGTACTTCCTGGCGTTGCCGGTAAATGCTGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAG                                                                                                                                     <  1:368207/134‑1               GCGCGAGTCGCTGCTTAACCCGTACTTCCTGGCGTTGCCGGTAAATGCTGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAG                                                                                                                                     >  2:368207/1‑134                                                                                                            GATCCTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGG                                                                                                                                    >  1:389624/1‑42                                                                                                            GATCCTGTGGGAGCGGCCTTGCGGCCCTTTCGCGACGCAAGG                                                                                                                                    <  2:389624/42‑1                                                                                                                                  GGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCACTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGG  >  2:106635/1‑150                                                                                                                                                                                                                                                                                         TTCCGGTATCCGCCGCGCGAGTCGCTGCTTAACCCGTACTTCCTGGCGTTGCCGGTAAATGCTGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/315893‑316022 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcgGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGG  >  NC_002947/336297‑336445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.