New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 316022	17 (1.000)	5 (0.310)	5/268	1.4	30.9%	intergenic (+34/+49)	cysQ/PP_0262	3'(2'),5'‑bisphosphate nucleotidase CysQ/hypothetical protein
	?	NC_002947	336297 =	6 (0.370)					intergenic (+142/+251)	PP_0278/PP_0279	hypothetical protein/hypothetical protein

GATGGCTTGCCGTTCCGGTATCCGCCGCGCGAGTCGCTGCTTAACCCGTACTTCCTGGCGTTGCCGGTAAATGCTGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCC  >  NC_002947/315881‑316171                                                                                                                                              |                                                                                                                                                      gATGGCTTGCCGTTCCGGTATCCGCCGCGCGAGTCGCTGCTTGACCCGTACTTCCTGGCGTTGCCGGTAAATGCTGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTCGCACGATCCTGTGGGAGCGGCCTTGCGTCGCGaaa                                                                                                                                               >  2:222929/1‑150 (MQ=255)          ccGTTCCGGTATCCGCCGCGCGAGTCGCTGCTTAACCCGTACTTCCTGGCGTTGCCGGTAAATGCTGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCaa                                                                                                                                      <  1:390098/150‑1 (MQ=255)             ttCCGGTATCCGCCGCGCGAGTCGCTGCTTAACCCGTACTTCCTGGCGTTGCCGGTAAATGCTGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGgccctttcgcgacgcaaggc                                                                                                                                   <  1:242655‑M1/150‑21 (MQ=255)                     tCCGCCGCGCGAGTCGCTGCGTAACCCGTACTTCCTGGCGTTGCCGGTAAATTCTGAATGGCGCCAGGCCTTCCTGAACCTCATCTACCTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAGGCCGCTCCca                                                                                                                           <  1:159798/150‑1 (MQ=255)                           gcgcgAGTCGCTGCTTAACCCGTACTTCCTGGCGTTGCCGGTAAATGCTGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGgccctttcgcgacgcaag                                                                                                                                     <  1:368207‑M1/134‑19 (MQ=255)                           gcgcgAGTCGCTGCTTAACCCGTACTTCCTGGCGTTGCCGGTAAATGCTGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGgccctttcgcgacgcaag                                                                                                                                     >  2:368207‑M1/1‑116 (MQ=255)                                 gTCGCTGCTTAACCCGTACTTCCTGGCGTTCCCCGTAAATGCTGAGTGGCACCAGGCCTTCCTGAACCTCATCTAAGTGCCTGGCACGATCCTGTGGGAGCCTCCTTGCGTCGCGAAAGGGCCGCAAGGCCGCTCCCATAAAGGCcccga                                                                                                               >  2:26250/1‑149 (MQ=255)                                              ccGTACTTCCTGGCGTTGCCGGTAAATGCTGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGc                                                                                                  >  2:235261/1‑150 (MQ=255)                                                                    tAAATGCTGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCCAGGTCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCt                                                                            <  1:258516/150‑1 (MQ=255)                                                                           tGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAGGCCGc                                                                                                                                >  2:62372/1‑91 (MQ=255)                                                                           tGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAGGCCGc                                                                                                                                <  1:62372/91‑1 (MQ=255)                                                                                    ccAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTc                                                                                                          <  1:370322/104‑1 (MQ=255)                                                                                    ccAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTc                                                                                                          >  2:370322/1‑104 (MQ=255)                                                                                        gCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGt                                                        >  2:77692/1‑150 (MQ=255)                                                                                          cTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCTGCCTTGCGTCGCGAAAGGGCCGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCa                                                      >  1:319092/1‑150 (MQ=255)                                                                                          cTTCCTGAACCGCATCTACCTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCa                                                      <  1:171098/150‑1 (MQ=255)                                                                                                         cTAACCGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGCCGCGAAAGGGCCGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTc                                       <  1:222929/150‑1 (MQ=255)                                                                                                                     cACGATCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTcc                           <  1:77692/150‑1 (MQ=255)                                                                                                                        gATCCTGTGGGAGCGGCCTTGCGgccctttcgcgacgcaagg                                                                                                                                    <  2:389624‑M1/42‑20 (MQ=255)                                                                                                                        gATCCTGTGGGAGCGGCCTTGCGgccctttcgcgacgcaagg                                                                                                                                    >  1:389624‑M1/1‑23 (MQ=255)                                                                                                                               tgGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGGCTCCAACGTCAAcc                 <  2:165774/150‑1 (MQ=255)                                                                                                                                        ccTTGCGTCGCGAAAGGGCCGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTgcccgcc        >  2:144157/1‑150 (MQ=255)                                                                                                                                              ggccctttcgcgacgcaaggccgctcccacaaaagccacttgcgctaaccacaagaaatgtttatgcacaagtggcatttgggacctgagcgaaaggcatgccggatcgctacgccgctggtctttgcgcaaacgcctgtttttactggg  >  2:106635‑M1/1‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                      GATGGCTTGCCGTTCCGGTATCCGCCGCGCGAGTCGCTGCTTAACCCGTACTTCCTGGCGTTGCCGGTAAATGCTGAATGGCGCCAGGCCTTCCTGAACCTCATCTAACTGCCTGGCACGATCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAGGCCGCTCCCACAAAGGCCGCGTTAGTCGTACTAGCGGTGCAGAACGTACTGGCCGCTGAACCTCACCGCCGGCTCGTCACTGCCGTCATTGCTCACCGTGGTCTCCAACGTCAACCGTGCCCGCCCACGCC  >  NC_002947/315881‑316171

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.