New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1306459 =	11 (0.650)	3 (0.190)	3/260	1.9	21.2%	intergenic (‑137/+49)	livH/livK	branched‑chain amino acid ABC transporter permease/branched‑chain amino acids ABC transporter substrate‑binding protein
	?	NC_002947	1306483 =	12 (0.760)					intergenic (‑161/+25)	livH/livK	branched‑chain amino acid ABC transporter permease/branched‑chain amino acids ABC transporter substrate‑binding protein

CCCGACCGGCGACCTGTCGTTCGACGACAAAGGCGACCTGAAAGACTTCAAGTTCGTGGTCTACGAATGGCACTTCGGCAAGCCGAAAACCGAAGTCTCCCCTCAGTAACTGCGTGACTAATAGCTGACCTACGAGCCCACTGTGCGAGCAGTGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1306616‑1306459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtgggctCGTAGGTCAGCTATTAGTCA  >  NC_002947/1306483‑1306502                                                                                                                                                                                    aCCGGCCGGCGACCTGTCGTTCGACGACAAACGCGACCTGAAAGACTTCAAGTTCGTGGTCTACGAATGGCACTTCGGCAAGCCGAAAACCGAAGTCTCCCCTCAGTAACTGCGTGCCTAATAGCTGACCTACGAGCCCACTGTGCGAGC                              >  2:284459/2‑150              CTGTCGTTCGACGACAAAGGCGACCTGAAAGACTTCAAGTTCGTGGTCTACGAATGGCACTTCGGCAAGCCGAAAACCGAAGTCTCCCCTCAGTAACTGCGTGACTAATAGCTGACCTACGAGCCCACTGCTCGCACAGTGGGCTCGTAG                 <  2:374590/150‑1                                       TGAAAGACTTCAAGTTCGTGGTCTACGAATGGCACTTCGGCAAGCCGAAAACCGAAGTCTCCCCTCAGTAACTGCGTGACTAATAGCTGACCTACGAGCCCACTGCTCGCACAGTGGGCTCGTAGGTCAGCTATTAGTCA  <  1:245538/140‑1                                       TGAAAGACTTCAAGTTCGTGGTCTACGAATGGCACTTCGGCAAGCCGAAAACCGAAGTCTCCCCTCAGTAACTGCGTGACTAATAGCTGACCTACGAGCCCACTGCTCGCACAGTGGGCTCGTAGGTCAGCTATTAGTCA  >  2:245538/1‑140                                                                                                                                                                                    CCCGACCGGCGACCTGTCGTTCGACGACAAAGGCGACCTGAAAGACTTCAAGTTCGTGGTCTACGAATGGCACTTCGGCAAGCCGAAAACCGAAGTCTCCCCTCAGTAACTGCGTGACTAATAGCTGACCTACGAGCCCACTGTGCGAGCAGTGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1306616‑1306459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtgggctCGTAGGTCAGCTATTAGTCA  >  NC_002947/1306483‑1306502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.