New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1306459 =	11 (0.650)	3 (0.190)	3/260	1.9	21.2%	intergenic (‑137/+49)	livH/livK	branched‑chain amino acid ABC transporter permease/branched‑chain amino acids ABC transporter substrate‑binding protein
	?	NC_002947	1306483 =	12 (0.760)					intergenic (‑161/+25)	livH/livK	branched‑chain amino acid ABC transporter permease/branched‑chain amino acids ABC transporter substrate‑binding protein

CAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAGGGGTACGGCCAGGAAACCGCGGGTGACGGTTTTAAGATTTTCAGGTGAGCCGGCCCCCGGATCGCGGGGATCGGGCCCATGAACCTCATAAAACGAAGCCCACTGCTCGCACAGTGGGCTCGTAGGTCAGCTATTAGTCACGCAGTTACTGAGGGGAGACTTCGGTTTTCGGCTTGCCGAAGTGCCATTCGTAGACCACGAACTTGAAGTCTTTCAGGTCGCCTTTGTCGTCGAACGACAGGT  >  NC_002947/1306316‑1306605                                                                                                                                                |                                                                                                                                                   cAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAGGGGTACGGCCAGGAAACCGCGGGTGACGGTTTTAAGATTTTCAGGTGAGCCGGCCCCCGGATCGCGGGGATCGGGCCCATGAACCTCATAAAACGAAGCCCAc                                                                                                                                              >  2:372151/1‑150 (MQ=255)      aTTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAGGGGTACGGCCAGGAAACCGCGGGTGACGGTTTTAAGATTTTCAGGTGAGCCGGCCCCCGGATCGCGGGGATCGGGCCCATGAACCTCATAAAACGAAGCCCACTGCTc                                                                                                                                         <  2:160525/150‑1 (MQ=255)                  cTAAAAACCTGATTTGCATTTCACTGGCAGGGGTACGGCCAGGAAACCGCGGGTGACGGTTTTAAGATTTTCAGGTGAGCCGGCCCCCGGATCGCGGGGATCGGGCCCATGAACCTCATAAAACGAAGCCCACTGCTCGCACAGTGGGCt                                                                                                                             >  2:228078/1‑150 (MQ=255)                                          tGGCAGGGGTACGGCCAGGAAACCGCGGGTGACGGTTTTAAGATTTTCAGGTGAGCCGGCCCCCGGATCGCGGGGATCGGGCCCATGAACCTCATAAAACGAAGCCCACTGCTCGCACACTGGGCTCGTAGGTCAGCTATTAGTCACGCa                                                                                                     >  2:182165/1‑150 (MQ=255)                                              aGGGGTACGGCCAGGAAACCGCGGGTGACGGTTTTAAGATTTTCAGGTGCGACAGCAGCCGGATCGCGGGGATCGGGCCCATGAACCTCATAAAACGAAGCCCACTGCTCGCACAGTGGGCTCGTAGGTCAGCTATTAGTCACGCAGTTa                                                                                                 >  1:360036/1‑150 (MQ=255)                                                     cGGCCAGGAAACCGCGGGTGACGGTTTTAAGATTTTCAGGTGAGCCGGCCCCCGGATCGCGGGGATCGGGCCCATGAACCTCATAAAACGAAGCCCACTGCTCGCACAGTGGGCTCGTAGGTCAGCTATTAGTCACGCAGTTACTGAggg                                                                                          <  2:360036/150‑1 (MQ=255)                                                                  gcgGGTGACGGTTTTAAGATTTTCAGGTGAGCCGGCCCCCGGATCGCGGGGATCGGGCCCATGAACCTCATAAAACGAAGCCCACTGCTCGCACAGTGGGCTCGTAGGTCAGCTATTAGTCACGCAGTTACTGAGGGGAGACTTCGGttt                                                                             >  1:362395/1‑150 (MQ=255)                                                                                tAAGATTTTCAGGTGAGCCGGCCCCCGGATCGCGGGGATCGGGCCCATGAACCTCATAAAACGAAGCCCACTGCTCGCACAGTGGGCTCGTAGGTCAGCTATTAGTCACGCAGTTACTGAGGGGAGACTTCGGTTTTCGGCTTGCCGAAg                                                               <  2:216540/150‑1 (MQ=255)                                                                                                                            tgactaatagctgacctacgAGCCCACTGTGCGAGCAGTGGGCTCGTAGGTCAGCTATTAGTCACGCAGTTACTGAGGGGAGACTTCGGTTTTCGGCTTGCCGAAGTGCCATTCGTAGACCACGAACTTGAAGTCTTTCa                             <  1:245538‑M1/120‑1 (MQ=255)                                                                                                                            tgactaatagctgacctacgAGCCCACTGTGCGAGCAGTGGGCTCGTAGGTCAGCTATTAGTCACGCAGTTACTGAGGGGAGACTTCGGTTTTCGGCTTGCCGAAGTGCCATTCGTAGACCACGAACTTGAAGTCTTTCa                             >  2:245538‑M1/21‑140 (MQ=255)                                                                                                                            ccATGAACCTCATAAAACGAAGCCCACTGCTCGCACAGTGGGCTCGTAGGTCAGCTATTAGTCACGCAGTTACTGAGGGGAGACTTCGGTTTTCGGCTTGCCGAAGTGCCATTCGTAGACCACGAACTTGAAGTCTTTCAGGTCGCCttt                   >  2:253289/1‑150 (MQ=255)                                                                                                                                           ctacgAGCCCACTGTGCGAGCAGTGGGCTCGTAGGTCAGCTATTAGTCACGCAGTTACTGAGGGGAGACTTCGGTTTTCGGCTTGCCGAAGTGCCATTCGTAGACCACGAACTTGAAGTCTTTCAGGTCGCCTTTGTCGTCGAACGACAg    <  2:374590‑M1/145‑1 (MQ=255)                                                                                                                                           aaCGAAGCCCACTGCTCGCACAGTGGGCTCGTAGGTCAGCTATTAGTCACGCAGTTACTGAGGGGAGACTTCGGTTTTCGGCTTGCCGAAGTGCCATTCGTAGACCACGAACTTGAAGTCTTTCAGGTCGCCTTTGTCGTCGAACGACAg    >  1:50750/1‑150 (MQ=255)                                                                                                                                             cGAAGCCCACTGCTCGCACAGTGGGCTCGTAGGTCAGCTATTAGTCACGCAGTTACTGAGGGGAGACTTCGGTTTTCGGCTTGCCGAAGTGCCATTCGTAGACCACGAACTTGAAGTCTTTCAGGTCGCCTTTGTCGTCGAACGACAGGt  <  1:253289/150‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                   CAGGCATTACAGCGCTCCTAAAAACCTGATTTGCATTTCACTGGCAGGGGTACGGCCAGGAAACCGCGGGTGACGGTTTTAAGATTTTCAGGTGAGCCGGCCCCCGGATCGCGGGGATCGGGCCCATGAACCTCATAAAACGAAGCCCACTGCTCGCACAGTGGGCTCGTAGGTCAGCTATTAGTCACGCAGTTACTGAGGGGAGACTTCGGTTTTCGGCTTGCCGAAGTGCCATTCGTAGACCACGAACTTGAAGTCTTTCAGGTCGCCTTTGTCGTCGAACGACAGGT  >  NC_002947/1306316‑1306605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.