New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 358087	1 (0.060)	4 (0.310)	4/212	1.3	82.0%	intergenic (+52/‑78)	tdcG‑I/PP_5441	L‑serine dehydratase/hypothetical protein
	?	NC_002947	= 358099	1 (0.080)					intergenic (+64/‑66)	tdcG‑I/PP_5441	L‑serine dehydratase/hypothetical protein

CATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTG  >  NC_002947/357951‑358236                                                                                                                                         |                                                                                                                                                      cATGCGCGATATCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCc                                                                                                                                          >  2:268370‑M2/1‑149 (MQ=255)      gcgATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgta                                                                                                                                     >  2:391328‑M2/1‑144 (MQ=255)           aCCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgtaggagc                                                                                                                                >  1:48610‑M2/1‑139 (MQ=255)                     atatGCACGACAAGTACAAAGAGACCTCGCGCGGCGGGCACGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgccc                                                                                                                      >  1:21454‑M2/1‑129 (MQ=255)                                                                        cTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtaggagc                                                                                                                                <  1:341305‑M1/89‑24 (MQ=255)                                                                        cTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtaggagc                                                                                                                                >  2:341305‑M1/1‑66 (MQ=255)                                                                                 gCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtag                                                                                                                                    <  1:367798‑M1/76‑20 (MQ=255)                                                                                 gCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGgattgcacagttcctgtag                                                                                                                                    >  2:367798‑M1/1‑57 (MQ=255)                                                                                                                     gggCAAGCCCGCTCCTACAGGgattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgcgtgcccgccgcgcgaggtctctttgtacttgtcgtgcatat                      >  1:21454‑M1/1‑21 (MQ=255)                                                                                                                             ccGCTCCTACAGGAACTGTGCAATCCCTGTAGGACACGAAAGACGAGGGTGTAGTCCCTTGAGGCTGATGCGGTTGCAACACAACCGCCTATGCCCCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCa              >  1:177043/1‑150 (MQ=255)                                                                                                                               gCTCCTACAGGgattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtctctttgtacttgtcgtgcatatcggcgccggt            >  1:48610‑M1/1‑11 (MQ=255)                                                                                                                               gCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatag                                                                         <  1:341305‑M2/89‑67 (MQ=255)                                                                                                                               gCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatag                                                                         >  2:341305‑M2/1‑23 (MQ=255)                                                                                                                                   cTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagc                                                                                  <  1:367798‑M2/76‑58 (MQ=255)                                                                                                                                   cTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagc                                                                                  >  2:367798‑M2/1‑19 (MQ=255)                                                                                                                                    tACAGGgattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtctctttgtacttgtcgtgcatatcggcgccggtatcgc       >  2:391328‑M1/1‑6 (MQ=255)                                                                                                                                         ggattgcacagttcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatagcgctgaccgccaggccgccgcgcgaggtctctttgtacttgtcgtgcatatcggcgccgatatcgcgcatg  >  2:268370‑M1/1‑1 (MQ=255)                                                                                                                                         |                                                                                                                                                      CATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCAGTGTGGGCGTTG  >  NC_002947/357951‑358236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.