New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 358087	1 (0.060)	4 (0.310)	4/212	1.3	82.0%	intergenic (+52/‑78)	tdcG‑I/PP_5441	L‑serine dehydratase/hypothetical protein
	?	NC_002947	= 358099	1 (0.080)					intergenic (+64/‑66)	tdcG‑I/PP_5441	L‑serine dehydratase/hypothetical protein

CATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCA  >  NC_002947/357951‑358224                                                                                                                                                     |                                                                                                                              cATGCGCGATATCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCc                                                                                                                              >  2:268370‑M2/1‑149 (MQ=255)      gcgATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgta                                                                                                                         >  2:391328‑M2/1‑144 (MQ=255)           aCCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgtaggagc                                                                                                                    >  1:48610‑M2/1‑139 (MQ=255)                     atatGCACGACAAGTACAAAGAGACCTCGCGCGGCGGGCACGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgccc                                                                                                          >  1:21454‑M2/1‑129 (MQ=255)                                                                                                                             ccGCTCCTACAGGAACTGTGCAATCCCTGTAGGACACGAAAGACGAGGGTGTAGTCCCTTGAGGCTGATGCGGTTGCAACACAACCGCCTATGCCCCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCa  >  1:177043/1‑150 (MQ=255)                                                                                                                               gCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatag                                                             <  1:341305‑M2/89‑67 (MQ=255)                                                                                                                               gCTCCTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagcactcgatag                                                             >  2:341305‑M2/1‑23 (MQ=255)                                                                                                                                   cTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagc                                                                      <  1:367798‑M2/76‑58 (MQ=255)                                                                                                                                   cTACAGGAACTGTGCAATCcctgtaggagcgggcttgcccgcgaagaggcccagaaggtcagctcagaaaatcagc                                                                      >  2:367798‑M2/1‑19 (MQ=255)                                                                                                                                                     |                                                                                                                              CATGCGCGATACCGGCGCCGATATGCACGACAAGTACAAAGAGACCTCGCGCGGCGGCCTGGCGGTCAGCGCTATCGAGTGCTGATTTTCTGAGCTGACCTTCTGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAGGAACTGTGCAATCCCTGTAGGAGCGGGCTTGCCCGCGAAGAGGCCCTTGAGGCTGATGCAGGTGCAACACAACCGCCTATGCCTCTTTATGGTGCGGTGATGGGCGCCCCGCCTACCGATCGTCGGATGTCGCGATCA  >  NC_002947/357951‑358224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.