| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2241317 = | 4 (0.240) | 4 (0.270) | 4/244 | 1.5 | 59.2% | intergenic (+21/‑260) | gltX/PP_t25 | glutamate‑‑tRNA ligase/tRNA‑Ala |
| ? | NC_002947 | 2241387 = | 2 (0.130) | intergenic (+91/‑190) | gltX/PP_t25 | glutamate‑‑tRNA ligase/tRNA‑Ala | |||||
GACGCCATGGAAATCCTCGGCCCCGACCTGACGCGCTACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGCGTGCCCGCGAATGCAATGGTAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAGCCCCAAAAAACCGGGGTAGG > NC_002947/2241171‑2241418 | tcgttttcgttcatcgctgtggacggggcggatattaagttcggattgaagggctgtaaaactaattttcaaaaatattcaaaaattttttcacagataacaatcacttaccgccctaccccggttttttggggcttagttggcctGTgg < 2:64493‑M1/4‑1 (MQ=255) aaaatattcaaaaattttttcacagataacaatcacttaccgccctaccccggttttttggggcttagttggcctGTGGGAGCGGGCGTGCCGGCGAATGCAATGGTAAATTCAATATc < 1:205125‑M1/44‑1 (MQ=255) aaaatattcaaaaattttttcacagataacaatcacttaccgccctaccccggttttttggggcttagttggcctGTGGGAGCGGGCGTGCCGGCGAATGCAATGGTAAATTCAATATc > 2:205125‑M1/76‑119 (MQ=255) gtgtCGAAGAAAGAAAAAAAAGAGTGGGAAAAGCTGTTGGCTTCCATAGCCTGATTCAGCTTGTCACCTAACCAGTGGGAGCGGGCGTCCCCGCCACTGCCATCCTAAATCCAATATCTCATTCGCCGCCACGCCCTCTCCCACAGcccc < 2:111042/150‑2 (MQ=255) ggAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTCCCCCTAACCAGTCGGAACGAGGGTGCCCGCGAAGGCAATGGAAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAGCCCCAAAAAACCGGGGTAgg > 1:64493/1‑150 (MQ=255) aatcacttaccgccctaccccggttttttggggcttagttggcctGTGGGAGCGGGCGTGCCCGCGAATGCAATGGTAAATTCAATATCGCATTCGCCgg > 1:222463‑M1/46‑100 (MQ=255) aatcacttaccgccctaccccggttttttggggcttagttggcctGTGGGAGCGGGCGTGCCCGCGAATGCAATGGTAAATTCAATATCGCATTCGCCgg < 2:222463‑M1/55‑1 (MQ=255) tAACCAGTGGGAGCGGGCGTGCCCGCGAATGCAATGGTAAATTCAATATCGCATTCGcc > 1:129533/1‑59 (MQ=255) tAACCAGTGGGAGCGGGCGTGCCCGCGAATGCAATGGTAAATTCAATATCGCATTCGcc < 2:129533/59‑1 (MQ=255) | GACGCCATGGAAATCCTCGGCCCCGACCTGACGCGCTACCGCCTGCGCCAGGCTCTGGACCTGCTGGGTGGGGTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGCGTGCCCGCGAATGCAATGGTAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAGCCCCAAAAAACCGGGGTAGG > NC_002947/2241171‑2241418 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |