New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2241317 =	4 (0.240)	4 (0.270)	4/244	1.5	59.2%	intergenic (+21/‑260)	gltX/PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala
	?	NC_002947	2241387 =	2 (0.130)					intergenic (+91/‑190)	gltX/PP_t25	glutamate‑‑tRNA ligase/tRNA‑Ala

GTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGCGTGCCCGCGAATGCAATGGTAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAGCCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGAACTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGA  >  NC_002947/2241243‑2241532                                                                                                                                                 |                                                                                                                                                  gtgtCGAAGAAAGAAAAAAAAGAGTGGGAAAAGCTGTTGGCTTCCATAGCCTGATTCAGCTTGTCACCTAACCAGTGGGAGCGGGCGTCCCCGCCACTGCCATCCTAAATCCAATATCTCATTCGCCGCCACGCCCTCTCCCACAGcccc                                                                                                                                              <  2:111042/150‑2 (MQ=255)                           ggAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTCCCCCTAACCAGTCGGAACGAGGGTGCCCGCGAAGGCAATGGAAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAGCCCCAAAAAACCGGGGTAgg                                                                                                                    >  1:64493/1‑150 (MQ=255)                                                                            TGGGAGCGGGCGTGCCCGCGAATGCAATGGTAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAGCCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGaaaa                                                                   <  2:266308‑M1/150‑1 (MQ=255)                                                                                          ccggcgaatgcgatattgaatttaccattgcattcgcgggcacgcccgctcccacAGGCCAACTAAGCCCCAAAAAACCGGGGTAGGGCGGTAAGTGAtt                                                                                                       >  1:222463‑M2/56‑100 (MQ=255)                                                                                          ccggcgaatgcgatattgaatttaccattgcattcgcgggcacgcccgctcccacAGGCCAACTAAGCCCCAAAAAACCGGGGTAGGGCGGTAAGTGAtt                                                                                                       <  2:222463‑M2/45‑1 (MQ=255)                                                                                                     gatattgaatttaccattgcattcgccggcacgcccgctcccacAGGCCAACTAAGCCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATAtttt                                                                         <  1:205125‑M2/75‑1 (MQ=255)                                                                                                     gatattgaatttaccattgcattcgccggcacgcccgctcccacAGGCCAACTAAGCCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATAtttt                                                                         >  2:205125‑M2/45‑119 (MQ=255)                                                                                                                                             ccacAGGCCAACTAAGCCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTTACAGCCCTTCAATCCGAACTTAATATCCGCCCCGTCCACAGCGATGaacgaaaacga  <  2:64493‑M2/146‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  GTGTCGAAGAAAGAAAACAAAGAGTGGGAAAAGCTGTTGGCTTCCATCGCCTGATTCAGCTTTGCACCTAACCAGTGGGAGCGGGCGTGCCCGCGAATGCAATGGTAAATTCAATATCGCATTCGCCGGCACGCCCGCTCCCACAGGCCAACTAAGCCCCAAAAAACCGGGGTAGGGCGGTAAGTGATTGTTATCTGTGAAAAAATTTTTGAATATTTTTGAAAATTAGTTTGACAGCCCTGCAATCCGAACTTAATATGCGCCCCGTCCACAGCGATGAACGAAAACGA  >  NC_002947/2241243‑2241532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.