New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4444087 =	13 (0.770)	4 (0.240)	4/272	1.7	25.2%	intergenic (‑62/+147)	nicT/nicF	metabolite transport protein NicT/maleamate amidohydrolase
	?	NC_002947	4444116 =	11 (0.660)					intergenic (‑91/+118)	nicT/nicF	metabolite transport protein NicT/maleamate amidohydrolase

GGATGAGCCTCCAGGTGATCTTGCTGTACAGCGCTTTCGTGCCATGGTCGATGTCACTGTGGACCGTGGTTGCATTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGTTATTGGGT  >  NC_002947/4443938‑4444217                                                                                                                                                      |                                                                                                                                   catgcagcaactcaggcacctggccggctgaacgccgggcagcgcctacccaataacaatcaaggaccggtgcgggaagcccgtccatgaccgcctgctgtccgggtggtcgccccgcaggagcactcggggtcttcaggcgctgtccag                                                                                                                                    <  1:175416‑M1/1‑1 (MQ=255) catgcagcaactcaggcacctggccggctgaacgccgggcagcgcctacccaataacaatcaaggaccggtgcgggaagcccgtccatgaccgcctgctgtccgggtggtcgccccgcaggagcactcggggtcttcaggcgctgtccag                                                                                                                                    >  1:323613‑M1/150‑150 (MQ=255)  atgcagcaactcaggcacctggccggctgaacgccgggcagcgcctacccaataacaatcaaggaccggtgcgggaagcccgtccatgaccgcctgctgtccgggtggtcgccccgcaggagcactcggggtcttcaggcgctgtccagg                                                                                                                                   <  2:374246‑M1/2‑1 (MQ=255)          tcgaGGTGATCTTGCTGTACAGCGCTTTCGTGCCATGGTCGATGTCACTGTGGACCGTGGTTGCATTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCAcgccgc                                                                                                                           <  2:22124/147‑1 (MQ=255)                       gatGTACAGCGCTTTCGTGCCATGGTCAATGTCACTGAGAACCGTGGTTGCCTTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACgcgg                                                                                                              >  2:86327/3‑150 (MQ=255)                       gCTGTACAGCGCTTTCGTGCCATGGTCGATGTCACTGTGGACCGTGGTTGCATTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACgcgg                                                                                                              >  2:29443/1‑150 (MQ=255)                         tGTACAGCGCTTTCGTGCCATGGTCGATGTCACTGTGGACCGTGGTTGCATTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACgcggcg                                                                                                            >  2:279176/1‑150 (MQ=255)                                             cctacccaataacaatcaaggaccggtgcgggaagcccgtccatgaccgcctgctgtccgggtggtcgccccgcaggagcactcggggtcttcaggcgctgtccaGGCCCGCCGCGCATTCTACGCGGCGGGc                                                                                                         >  1:367898‑M1/106‑133 (MQ=255)                                             cctacccaataacaatcaaggaccggtgcgggaagcccgtccatgaccgcctgctgtccgggtggtcgccccgcaggagcactcggggtcttcaggcgctgtccaGGCCCGCCGCGCATTCTACGCGGCGGGc                                                                                                         <  2:367898‑M1/28‑1 (MQ=255)                                                                      ttGCATTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGac                                                               >  2:376385/1‑150 (MQ=255)                                                                         cATTTGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGaccac                                                            >  2:175416/1‑150 (MQ=255)                                                                           ttCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTCTGTGGTAGCTTTAAGCCCAGCAGTATTCGACGCTCGGGGCACGCCGCGCATGCTACGCGGCGGGCCTGGACAGCGGCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCAccc                                                          >  1:8075/1‑150 (MQ=255)                                                                              gCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGa                                                       >  2:282962/1‑150 (MQ=255)                                                                                          accgcctgctgtccgggtggtcgccccgcaggagcactcggggtcttcaggcgctgtccaGGCACGCCGCGCATTCTACGCGGCGGGCCTg                                                                                                      >  2:26772‑M1/61‑91 (MQ=255)                                                                                          accgcctgctgtccgggtggtcgccccgcaggagcactcggggtcttcaggcgctgtccaGGCACGCCGCGCATTCTACGCGGCGGGCCTg                                                                                                      <  1:26772‑M1/31‑1 (MQ=255)                                                                                                  ccTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACgg                                   <  1:376385/150‑1 (MQ=255)                                                                                                                           ttAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGt          >  1:246924/1‑150 (MQ=255)                                                                                                                                gCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGTCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGTTATTg     >  2:251839/1‑150 (MQ=255)                                                                                                                                  cagcagTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGCCAGCGCCTGAAGACCCCGAGTGCTCCTGAGGGGCGACCACCCGGACAGCAGGCGGTCCAGCACTGTCCGCCCCCACCGGTCCTTGATTGTTagtagg   >  2:91213/1‑145 (MQ=255)                                                                                                                                   agcagTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGTTATTGGGt  <  2:386311/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                   GGATGAGCCTCCAGGTGATCTTGCTGTACAGCGCTTTCGTGCCATGGTCGATGTCACTGTGGACCGTGGTTGCATTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGTTATTGGGT  >  NC_002947/4443938‑4444217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.