New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4444087 =	13 (0.770)	4 (0.240)	4/272	1.7	25.2%	intergenic (‑62/+147)	nicT/nicF	metabolite transport protein NicT/maleamate amidohydrolase
	?	NC_002947	4444116 =	11 (0.660)					intergenic (‑91/+118)	nicT/nicF	metabolite transport protein NicT/maleamate amidohydrolase

TTGCATTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGTTATTGGGTAGGCGCTGCCCGGCGTTCAGCCGGCCAGGTGCCTGAGTTGCTGCATG  >  NC_002947/4444007‑4444264                                                                                                              |                                                                                                                                                     ttGCATTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGac                                                                                                              >  2:376385/1‑150 (MQ=255)    cATTTGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGaccac                                                                                                           >  2:175416/1‑150 (MQ=255)      ttCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTCTGTGGTAGCTTTAAGCCCAGCAGTATTCGACGCTCGGGGCACGCCGCGCATGCTACGCGGCGGGCCTGGACAGCGGCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCAccc                                                                                                         >  1:8075/1‑150 (MQ=255)         gCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGa                                                                                                      >  2:282962/1‑150 (MQ=255)                     accgcctgctgtccgggtggtcgccccgcaggagcactcggggtcttcaggcgctgtccaGGCACGCCGCGCATTCTACGCGGCGGGCCTg                                                                                                                                                     <  1:26772‑M1/31‑1 (MQ=255)                     accgcctgctgtccgggtggtcgccccgcaggagcactcggggtcttcaggcgctgtccaGGCACGCCGCGCATTCTACGCGGCGGGCCTg                                                                                                                                                     >  2:26772‑M1/61‑91 (MQ=255)                             ccTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACgg                                                                                  <  1:376385/150‑1 (MQ=255)                                                      ttAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGt                                                         >  1:246924/1‑150 (MQ=255)                                                           gCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGTCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGTTATTg                                                    >  2:251839/1‑150 (MQ=255)                                                             cagcagTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGCCAGCGCCTGAAGACCCCGAGTGCTCCTGAGGGGCGACCACCCGGACAGCAGGCGGTCCAGCACTGTCCGCCCCCACCGGTCCTTGATTGTTagtagg                                                  >  2:91213/1‑145 (MQ=255)                                                              agcagTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGTTATTGGGt                                                 <  2:386311/150‑1 (MQ=255)                                                                               caggcccgccgcgtagaatgcgcggcgtgccTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGt                                                                                           >  2:26772‑M2/32‑91 (MQ=255)                                                                               caggcccgccgcgtagaatgcgcggcgtgccTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGt                                                                                           <  1:26772‑M2/60‑1 (MQ=255)                                                                                  gcccgccgcgtagaatgcgcggcgggccTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGTTATTGGGTAgg                                              >  1:367898‑M2/29‑133 (MQ=255)                                                                                  gcccgccgcgtagaatgcgcggcgggccTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGTTATTGGGTAgg                                              <  2:367898‑M2/105‑1 (MQ=255)                                                                                     cgccgcGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGTTATTGGGTAGGCGCTGCCCGGCGTTCAGCCg                          <  1:282962/150‑1 (MQ=255)                                                                                                cTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGTTATTGGGTAGGCGCTGCCCGGCGTTCAGCCGGCCAGGTGCCt               <  2:401940/150‑1 (MQ=255)                                                                                                            ccTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGTTATTGGGTAGGCGCTGCCCGGCGTTCAGCCGGCCAGGTGCCTGAGTTGCTGCAt   <  2:374246‑M2/148‑1 (MQ=255)                                                                                                             cTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGTTATTGGGTAGGCGCTGCCCGGCGTTCAGCCGGCCAGGTGCCTGAGTTGCTGCATg  <  1:175416‑M2/149‑1 (MQ=255)                                                                                                             cTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGTTATTGGGTAGGCGCTGCCCGGCGTTCAGCCGGCCAGGTGCCTGAGTTGCTGCATg  >  1:323613‑M2/2‑150 (MQ=255)                                                                                                              |                                                                                                                                                     TTGCATTCGCAATTGGCATTTCCTGTCTCCTGGCGGGCGACTTTGTGGTTGTTTTAAGGCCAGCAGTTTTCGACGCGCCGGGCACGCCGCGCATTCTACGCGGCGGGCCTGGACAGCGCCTGAAGACCCCGAGTGCTCCTGCGGGGCGACCACCCGGACAGCAGGCGGTCATGGACGGGCTTCCCGCACCGGTCCTTGATTGTTATTGGGTAGGCGCTGCCCGGCGTTCAGCCGGCCAGGTGCCTGAGTTGCTGCATG  >  NC_002947/4444007‑4444264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.