New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5897799 =	11 (0.650)	4 (0.290)	4/224	1.4	35.0%	intergenic (‑143/+91)	PP_5172/PP_5173	hypothetical protein/RND family transporter
	?	NC_002947	5897875 =	6 (0.440)					intergenic (‑219/+15)	PP_5172/PP_5173	hypothetical protein/RND family transporter

TAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTC  >  NC_002947/5897762‑5898021                                                                                                                  |                                                                                                                                                   tAAGAATTTTTATATAACCATTTAAGAGCACACGCCTCTGGTAGTAGCAGGTTTGCCCTCGAATACGGTGGTCGATGCACCATCGCACTCGCCGCTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTcg                                                                                                                <  1:364915/150‑1 (MQ=255)          ttATATAACCATTTAAGAGAACACGCCTTTGTTAGTAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg                                                                                                       <  2:198215/150‑1 (MQ=255)             tataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTAc                                                                                                    <  1:293623/150‑1 (MQ=255)                                   ccTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTa                                                                                                     >  1:67226/1‑127 (MQ=255)                                   ccTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTa                                                                                                     <  2:67226/127‑1 (MQ=255)                                             GAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGGTCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagcag                                                                    <  2:259332‑M1/150‑1 (MQ=255)                                             GAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAAcagcag                                                                    >  1:259332‑M1/1‑150 (MQ=255)                                              gGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc                                                                   >  2:366095‑M1/2‑150 (MQ=255)                                                    TTTACCCGCGAATACGGTGGTCGCTGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTGCAGCGCCGGCAGGAACAGCagcgttagg                                                             <  2:228642‑M1/150‑5 (MQ=255)                                                        CCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGGGCCGGCAGGAAGAGCAGCGTCAGCAAgg                                                         <  1:66941‑M1/150‑1 (MQ=255)                                                         ccgcgaatgcgatggtgcatcgaccaccgtattcgcgggtaaacccgctcctaccagGGGCCATATgg                                                                                                                                          >  1:411625‑M2/58‑68 (MQ=255)                                                         ccgcgaatgcgatggtgcatcgaccaccgtattcgcgggtaaacccgctcctaccagGGGCCATATgg                                                                                                                                          <  2:411625‑M2/11‑1 (MQ=255)                                                         CCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCa                                                                                                  <  2:187766‑M1/108‑1 (MQ=255)                                                         CCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCa                                                                                                  >  1:187766‑M1/1‑108 (MQ=255)                                                          cgcgaatgcgatggtgcatcgaccaccgtattcgcgggtaaacccgctcctaccagGGGCCATATGGGCCTTCAGGc                                                                                                                                >  1:381816‑M2/57‑77 (MQ=255)                                                          cgcgaatgcgatggtgcatcgaccaccgtattcgcgggtaaacccgctcctaccagGGGCCATATGGGCCTTCAGGc                                                                                                                                <  2:381816‑M2/21‑1 (MQ=255)                                                                        tCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATccc                                         <  1:129268/150‑1 (MQ=255)                                                                                                     ccgctcctaccagGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGcccc            >  2:287929‑M2/14‑150 (MQ=255)                                                                                                       gctcctaccagGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAg          >  1:223962‑M2/12‑150 (MQ=255)                                                                                                       gctcctaccagGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAg          >  2:363440‑M2/12‑150 (MQ=255)                                                                                                               cagGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTc  >  1:57658‑M2/4‑150 (MQ=255)                                                                                                                  |                                                                                                                                                   TAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCCTTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGCGTAGGCCATGGGGCCCCAGAACACCTC  >  NC_002947/5897762‑5898021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.