New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6032797 =	11 (0.650)	4 (0.240)	4/270	1.7	23.8%	intergenic (+5/+131)	dppA‑IV/PP_5284	dipeptide transport protein/hypothetical protein
	?	NC_002947	6032901 =	15 (0.910)					intergenic (+109/+27)	dppA‑IV/PP_5284	dipeptide transport protein/hypothetical protein

GCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCAGTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTTCAACGACAGCGTCAAA  >  NC_002947/6032803‑6033045                                                                                                   |                                                                                                                                                 gCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGGAGCGCCAGCGTGGCAGTTGACCCTACCCCTGTGGGGGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACGACCTCAGACCAAAAACCACCCAtacccg                                                                                               >  2:299940/1‑145 (MQ=37)                  cccGCTCCTACAGGGGTAGCGCCAGCCTGGCAGTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTc                                                                              >  2:199770/1‑150 (MQ=255)                   ccGCTCCTACAGGGGTAGCGCCAGCCTGGCAGTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGct                                                                                                                                    <  1:194340/95‑1 (MQ=255)                   ccGCTCCTACAGGGGTAGCGCCAGCCTGGCAGTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGct                                                                                                                                    >  2:194340/1‑95 (MQ=255)                          tACAGGGGTAGCGCCAGCCTGGCAGTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGa                                                                                       <  1:128757/133‑1 (MQ=255)                          tACAGGGGTAGCGCCAGCCTGGCAGTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGa                                                                                       >  2:128757/1‑133 (MQ=255)                           acaggggtagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaagaggccggtacTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACaa                                                                                                             <  2:6919‑M2/38‑1 (MQ=255)                           acaggggtagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaagaggccggtacTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACaa                                                                                                             >  1:6919‑M2/73‑110 (MQ=255)                                 gtagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaagaggccggtacTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAatgat                                                               >  2:321384‑M2/67‑150 (MQ=255)                                       ccAGCCTGGCAGTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGAtgtg                                                         >  1:212156/1‑150 (MQ=255)                                              ggCAGTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGc                                                  >  1:70212/1‑150 (MQ=255)                                                cAGTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCAc                                                >  1:396264/1‑150 (MQ=255)                                                  gTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCAccc                                              >  1:399161/1‑150 (MQ=255)                                                             cccTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGCCCCTATAAGGCCCTCAGTCCTCCCTCCGACCCCAATCCACCCCTGCCCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACatcaatc                                   >  1:46005/1‑150 (MQ=255)                                                               cTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGt                                                                                                                              <  1:358088/57‑1 (MQ=255)                                                               cTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGt                                                                                                                              >  2:358088/1‑57 (MQ=255)                                                                                         gggCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTTCAACGACAGCg       >  2:343017/1‑150 (MQ=255)                                                                                           gCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGACTCCCCATCACCAATGATGATGTGATCCCGCACCCGCACATCAATCAACGCCAGCCCCCGCTTCAACGACAGCGTc     >  2:352032/1‑150 (MQ=255)                                                                                              ggtacTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTTCAACGACAGCGTCaaa  <  1:321384‑M2/145‑1 (MQ=255)                                                                                                   |                                                                                                                                                 GCCTCTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCAGTTGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTTCAACGACAGCGTCAAA  >  NC_002947/6032803‑6033045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.