New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	742007 =	NA (NA)	5 (0.090)	5/226	NT	NA	coding (105/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	1426180 =	NA (NA)					coding (71/1422 nt)	PP_1250	group II intron‑encoding maturase

GCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/742162‑742007 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgtcaTCC‑‑CGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGACGTGCGTATCAACGCGTGGTC  >  NC_002947/1426180‑1426328                                                                                                                                                                                                                                                                                                                     GCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCA                                                                                                                                                               >  1:1052897/1‑150      CGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTC                                                                                                                                                          <  2:201591/150‑1                               CCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCA                                                                                                                                                         >  1:1544450/1‑126                               CCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCA                                                                                                                                                         <  2:1544450/126‑1                                                        ACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCAGGCGTCACCCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAAG                                                                                                        <  1:1605250/150‑1                                                                                         GCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCATCC‑‑CGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAA                                                                                                         <  1:604589/114‑1                                                                                         GCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCATCC‑‑CGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAA                                                                                                         >  2:604589/1‑114                                                                                              ATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCATCC‑‑CGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAA                                                                                                          >  1:797492/1‑108                                                                                              ATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCATCC‑‑CGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAA                                                                                                          <  2:797492/108‑1                                                                                                                                                      ACTGTCATCC‑‑CGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGACGTGCGTAT              >  1:44501/1‑144                                                                                                                                                      ACTGTCATCC‑‑CGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGACGTGCGTAT              <  2:44501/144‑1                                                                                                                                                      ACTGTCATCC‑‑CGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGC                                 >  2:1595116/1‑125                                                                                                                                                      ACTGTCATCC‑‑CGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGC                                 <  1:1595116/125‑1                                                                                                                                                        TGTCATCC‑‑CGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGACGTGCGTATCAACGCGT      >  2:717480/1‑150                                                                                                                                                        TGTCATCC‑‑CGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGC                                 >  1:180096/1‑123                                                                                                                                                        TGTCATCC‑‑CGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGC                                 <  2:180096/123‑1                                                                                                                                                         gaCATCC‑‑CGAGCTCCGGCCAGAAGCCGGGGGTGCCGCCTGACAGTGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGACGTGCGTATCAACGCGTG     <  2:586519/148‑1                                                                                                                                                         GTCATCC‑‑CGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGACGTGCGTATCAACGCGTG     <  2:64197/150‑1                                                                                                                                                            ATCC‑‑CGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGACGTGCGTATCAACGCGTGGTC  <  1:392776/150‑1                                                                                                                                                                                                                                                                                                                     GCGACCGTTATGCCATCGGCACCCGGAGCCCCCTTGTTGCTAACCACGCGTTGATACGCACGCCTGAGGTTGGCCGGTGCAAGCACCCGCTCCATCAGCGTGTCCGGCTCCGCGTTCGTCCACGTCACGGACGCCGTCGATACCTTTGCACTGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/742162‑742007 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgtcaTCC‑‑CGAGCTCCGGCCAGAAGCCGAGGGTGACGCCTGACAGTGCAAAGGTATCGACGGCGTCCGTGACGTGGACGAACGCGGAGCCGGACACGCTGATGGAGCGGGTGCTTGCACCGGCCAACCTCAGACGTGCGTATCAACGCGTGGTC  >  NC_002947/1426180‑1426328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.