New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1899282 | 79 (1.320) | 4 (0.090) +AAACGTTACTGATTGCACTGTCCCTGTG |
3/184 | NT | 7.4% | intergenic (+310/‑210) | PP_t18/PP_1703 | tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase |
? | NC_002947 | 2749651 = | 51 (0.850) | intergenic (+81/+33) | PP_2405/PP_2406 | hypothetical protein/quinate/shikimate dehydrogenase |
CAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1899241‑1899282 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGC > NC_002947/2749651‑2749735 |||||||||||||||||||||||||||| ttggctTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTGGGGCATGCCCGCGAAGAGGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCT > 1:896264/7‑150 tTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTGGGGCATGCCCGCGAAGAGGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTTCCGC < 2:896264/149‑1 GCGGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTGGGGCATGCCCGCGAAGAAGCCAACACTTTT < 1:1114211/89‑1 GCGGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTGGGGCATGCCCGCGAAGAAGCCAACACTTTT > 2:1114211/1‑89 GGGCACGCCCGCTCCCACAGGTACTGCGCAAACGTTACTGATTGCACTGTCCCTGTGG > 2:1435296/1‑58 GCACGCCCGCTCCCACAGGTACTGCGCAAACGTTAC > 1:218536/1‑36 GCACGCCCGCTCCCACAGGTACTGCGCAAACGTTAC < 2:218536/36‑1 |||||||||||||||||||||||||||| CAGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1899241‑1899282 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGC > NC_002947/2749651‑2749735 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |