New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1899282	79 (1.320)	4 (0.090) +AAACGTTACTGATTGCACTGTCCCTGTG	3/184	NT	7.4%	intergenic (+310/‑210)	PP_t18/PP_1703	tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase
	?	NC_002947	2749651 =	51 (0.850)					intergenic (+81/+33)	PP_2405/PP_2406	hypothetical protein/quinate/shikimate dehydrogenase

ACTTTGGCGAGGGGGATTATGGTGGGCAGGAACAGGTGATACAGGCTTTGCTGGATGAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGAACACCGCCATGTTGCTGCCATCCAGCG  >  NC_002947/2749503‑2749796                                                                                                                                                     |                                                                                                                                                  aCTTTGGCGAGGGGGATTATGGTGGGCAGGAACAGGTGATACAGGCTTTGCTGGATGAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCgg                                                                                                                                                  <  1:1034751/150‑1 (MQ=255)            ggggATTATGGTGGGCAGGAACAGGTGATACAGGCATTGCTAAAGTAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCcgcg                                                                                                                                       >  2:56955/1‑150 (MQ=255)                          gCAGGAACAGGTGATACAGGCTTTGCTGGATGAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACt                                                                                                                         >  2:318863/1‑150 (MQ=255)                            aGGAACAGGTGATACAGGCTTTGCTGGATGAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACttt                                                                                                                       >  2:851494/1‑150 (MQ=255)                                    gTGATACAGGCTTTGCTGGATGAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAaca                                                                                                                           >  1:1066094/1‑138 (MQ=255)                                    gTGATACAGGCTTTGCTGGATGAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAaca                                                                                                                           <  2:1066094/138‑1 (MQ=255)                                    gTGATACAGGCTTTGCTGGATGAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAg                                                                                                               <  2:1255421/150‑1 (MQ=255)                                    gTGATACAGGCTTTGCTGGAGGAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAg                                                                                                               <  2:312962/150‑1 (MQ=255)                                     tGATACAGGCTTTGCTGGATGAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAgg                                                                                                              <  2:278389/150‑1 (MQ=255)                                              cTTTGCTGGATGAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTgg                                                                                                     <  2:1536746/150‑1 (MQ=255)                                              cTTTGCTGGATGAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTgg                                                                                                     <  1:1050927/150‑1 (MQ=255)                                                      gATGAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGACGAAGCAAACAATTTTCTATCATGTGAAACTGGCAAAGTgc                                                                                             >  1:28244/1‑150 (MQ=255)                                                         gAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGTGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGcc                                                                                          <  1:1323460/150‑1 (MQ=255)                                                         gAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTgcgat                                                                                          <  1:56955/150‑3 (MQ=255)                                                                ggTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATcc                                                                                   >  2:1245141/1‑150 (MQ=255)                                                                 gTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCcg                                                                                  >  1:51299/1‑150 (MQ=255)                                                                  tGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCcgc                                                                                 >  2:772695/1‑150 (MQ=255)                                                                   gATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGAGAGTGCAAACAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCcgcg                                                                                >  1:1521664/1‑150 (MQ=255)                                                                               ttggcttcttcgcgggcacgcccgctcccacaggtactgcgcaaacgttactgattgcactgtccctgtgGGGCATGCCCGCGAAGAGGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCt                                                                    >  1:896264‑M2/71‑150 (MQ=255)                                                                               ccGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGccc                                                                    >  2:839943/1‑149 (MQ=255)                                                                                cGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGGGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTg                                                                   >  1:232830/1‑150 (MQ=255)                                                                                cGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAg                                                                                                               <  1:340694/106‑1 (MQ=255)                                                                                cGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAg                                                                                                               >  2:340694/1‑106 (MQ=255)                                                                                cGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTg                                                                   <  1:851494/150‑1 (MQ=255)                                                                                    ttcttcgcgggcacgcccgctcccacaggtactgcgcaaacgttactgattgcactgtccctgtgGGGCATGCCCGCGAAGAGGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTtccgc                                                               <  2:896264‑M2/85‑1 (MQ=255)                                                                                     tctTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATc                                                                         <  1:859447/139‑1 (MQ=255)                                                                                     tctTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATc                                                                         >  2:859447/1‑139 (MQ=255)                                                                                     tctTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTgccgcc                                                              >  1:491506/1‑150 (MQ=255)                                                                                      ctTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGccgccc                                                             >  1:1247814/1‑150 (MQ=255)                                                                                        tCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGccgcccgc                                                           >  2:336232/1‑150 (MQ=255)                                                                                          gcgggcacgcccgctcccacaggtactgcgcaaacgttactgattgcactgtccctgtgGGGCATGCCCGCGAAGAAGCCAACACtttt                                                                                                                      >  2:1114211‑M2/60‑89 (MQ=255)                                                                                          gcgggcacgcccgctcccacaggtactgcgcaaacgttactgattgcactgtccctgtgGGGCATGCCCGCGAAGAAGCCAACACtttt                                                                                                                      <  1:1114211‑M2/30‑1 (MQ=255)                                                                                          gcgGGCATGCCCCAAAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTg                                                         <  1:466425/150‑1 (MQ=255)                                                                                            gggcacgcccgctcccacaggtactgcgcaaacgttactgattgcactgtccctgtgg                                                                                                                                                   >  2:1435296‑M2/58‑58 (MQ=255)                                                                                                  gCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGaaa                                                                                                         >  1:176851/1‑94 (MQ=255)                                                                                                  gCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGaaa                                                                                                         <  2:176851/94‑1 (MQ=255)                                                                                                     ccACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGaa                                              >  2:906017/1‑150 (MQ=255)                                                                                                     ccACAGGGACAGCGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAg                                                                                                               >  1:367659/1‑85 (MQ=255)                                                                                                     ccACAGGGACAGCGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAg                                                                                                               <  2:367659/85‑1 (MQ=255)                                                                                                      cacaGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGGGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAAt                                             <  2:232830/150‑1 (MQ=255)                                                                                                      cacaGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAAt                                             <  1:1245141/150‑1 (MQ=255)                                                                                                      cacaGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAAt                                             >  2:33951/1‑150 (MQ=255)                                                                                                        caGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGc                                           <  1:318863/150‑1 (MQ=255)                                                                                                                    aaTCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTg                               >  1:370799/1‑150 (MQ=255)                                                                                                                      tCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGa                             >  2:608180/1‑150 (MQ=255)                                                                                                                       cAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGaa                            <  1:613237/150‑1 (MQ=255)                                                                                                                         gTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGGAAAGGGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGAaca                          >  2:1549379/1‑150 (MQ=255)                                                                                                                         gTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAAc                                                      <  1:78266/122‑1 (MQ=255)                                                                                                                         gTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAAc                                                      >  2:78266/1‑122 (MQ=255)                                                                                                                           aaCGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGAACAcc                        >  2:1600147/1‑150 (MQ=255)                                                                                                                                   gggaGTACCTGGGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGAACACCGCCATGtt                <  2:28244/147‑1 (MQ=255)                                                                                                                                          ccTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGAACACCGCCATGTTGCTGCCa         >  1:1019310/1‑150 (MQ=255)                                                                                                                                           cTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGAACACCGCCATGTTGCTGCCAt        <  1:336232/150‑1 (MQ=255)                                                                                                                                           cTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGAACACCGCCATGTTGCTGCCAt        >  1:163743/1‑150 (MQ=255)                                                                                                                                           cTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGAACACCGCCATGTTGCTGCCAt        <  1:1012368/150‑1 (MQ=255)                                                                                                                                              tgGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGc                                                                                                    <  1:752877/55‑1 (MQ=255)                                                                                                                                              tgGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGc                                                                                                    >  2:752877/1‑55 (MQ=255)                                                                                                                                                 gAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGAACACCGCCATGTTGCTGCCATCCAGCg  >  1:864040/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                  ACTTTGGCGAGGGGGATTATGGTGGGCAGGAACAGGTGATACAGGCTTTGCTGGATGAAAAAGGGTGATTCTCCTGTACCGGCCTCTTCGCGGGCATGCCCCACAGGGACAGTGCAATCAGTAACGTTTGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAAGCCAACACTTTTCTATCAGGTGAAACTGGCAAAGTGCGCCTGCATCCGCGCCGCATCCGCCTGCCGCCCGCTGAACAGCTCGAATGCCTTCACCGCCTGGAACACCGCCATGTTGCTGCCATCCAGCG  >  NC_002947/2749503‑2749796

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.