New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3431097	60 (1.000)	4 (0.070)	4/230	NT	6.5%	coding (106/348 nt)	PP_3046	hypothetical protein
	?	NC_002947	= 3431135	58 (1.010)					coding (144/348 nt)	PP_3046	hypothetical protein

GCCCGTCGGCAGGCCACACAATTCCGTCCCGGCCAAGGAGCCTGAACATGAGCAAAACCTATGTAGAGCCGGTCCATGCCGGTGAATTCCTGCTGTCCGAAGGCGCAGGCAAGATCTCCCGCGAAGTGATCGAACTGGCCCCAGGCGATGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3430945‑3431097 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccGCTGGCAGTCAGCTGACCGAGCACCTGACCAGCCACCAGGGCATCGCCTGGGGCCAGTTCGATCACTTCGCGGGAGATCTTGCCTGCGCCTTCGGACAGCAGGAATTCACCGGCATGGACCGGCTCTACATAGGTTTTGCTCATGTTCA  <  NC_002947/3431135‑3430987                                                                                                                                                                                                                                                                                                                GCCCGTCGGCAGGCCACACAATTCCGTCCCGGCCAAGGAGCCTGAACATGAGCAAAACCTATGTAGAGCCGGTCCATGCCGGTGAATTCCTGCTGTCCGAAGGCGCAGGCAAGATCTCCCGCGAAGTGATCGAACTGGCCCCAGGCGATG                                                                                                                                                          >  2:534816/1‑150              CCACACAATTCCGTCCCGGCCAAGGAGCCTGAACATGAGCAAAACCTATGTAGAGCCGGTCCATGCCGGTGAATTCCTGCTGTCCGAAGGCGCAGGCAAGATCTCCCGCGAAGTGATCGAACTGGCCCCAGGCGATGCCCGCTGGCAGTC                                                                                                                                             >  1:1226298/1‑150                                                        AACCTATGTAGAGCCGGTCCATGCCGGTGAATTCCTGCTGTCCGAAGGCGCAGGCAAGATCTCCCGCGAAGTGATCGAACTGGCCCCAGGCGATGCCCGCTGGCAGTCAGCTGACCGAGCACCTGACCAGCCACCAGGGCGTCGCCTGGG                                                                                                   <  2:1226298/150‑1                                                                   AGCCGGTCCATGCCGGTGAATTCCTGCTGTCCGAAGGCGCAGGCAAGATCTCCCGCGAAGTGATCGAACTGGCCCCAGGCGAT                                                                                                                                                           <  1:214685/83‑1                                                                   AGCCGGTCCATGCCGGTGAATTCCTGCTGTCCGAAGGCGCAGGCAAGATCTCCCGCGAAGTGATCGAACTGGCCCCAGGCGAT                                                                                                                                                           >  2:214685/1‑83                                                                                                               AAGATCTCCCGCGAAGTGATCGAACTGGCTCCAGGCGATGCCCGCTGGCAGTCAGCTGACCGAGCACCTGACCAGCCACCAGGGCATCGCCTGGGGC                                                                                                 >  2:1438559/1‑97                                                                                                               AAGATCTCCCGCGAAGTGATCGAACTGGCCCCAGGCGATGCCCGCTGGCAGTCAGCTGACCGAGCACCTGACCAGCCACCAGGGCATCGCCTGGGGC                                                                                                 <  1:1438559/97‑1                                                                                                                                                      GCCCGCTGGCAGTCAGCTGACCGAGCACCTGACCAGCCACCAGGGCATCGCCTGGGGCCAGTTCGATCACTTCGCGGGAGATCTTGCCTGCGCCTTCGGACAGCAGGAATTCACCGGCATGGACCGGCTCTACATAGGTT               <  1:937559/140‑1                                                                                                                                                      GCCCGCTGGCAGTCAGCTGACCGAGCACCTGACCAGCCACCAGGGCATCGCCTGGGGCCAGTTCGATCACTTCGCGGGAGATCTTGCCTGCGCCTTCGGACAGCAGGAATTCACCGGCATGGACCGGCTCTACATAGGTT               >  2:937559/1‑140                                                                                                                                                        CCGCTGGCAGTCAGCTGACCGAGCACCTGACCAGCCACCAGGGCATCGCCTGGGGCCAGTTCGATCACTTCGCGGGAGATCTTGCCTGCGCCTTCGGACAGCAGGAATTCACCGGCATGGACCGGCTCTACATAGGTTTTGCTCATGTTC   >  1:1232656/1‑150                                                                                                                                                         CGCCGGCAGTTAGCTGACCGAGCACCTGACCAGCCACCAGGGAATCGCCTGGGGCCAGTTCGATCACTTCGCGGGAGATCTTGCCTGCGCCTTCGGACAGCNGGAATTCACCGGCATGGACCGGCTCTACATAGGTTTTGCTCATGTTCA  <  1:1096627/150‑1                                                                                                                                                                                                                                                                                                                GCCCGTCGGCAGGCCACACAATTCCGTCCCGGCCAAGGAGCCTGAACATGAGCAAAACCTATGTAGAGCCGGTCCATGCCGGTGAATTCCTGCTGTCCGAAGGCGCAGGCAAGATCTCCCGCGAAGTGATCGAACTGGCCCCAGGCGATGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3430945‑3431097 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccGCTGGCAGTCAGCTGACCGAGCACCTGACCAGCCACCAGGGCATCGCCTGGGGCCAGTTCGATCACTTCGCGGGAGATCTTGCCTGCGCCTTCGGACAGCAGGAATTCACCGGCATGGACCGGCTCTACATAGGTTTTGCTCATGTTCA  <  NC_002947/3431135‑3430987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.