| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3560251 | 61 (1.020) | 4 (0.070) | 4/230 | NT | 6.1% | intergenic (‑109/‑38) | PP_3143/tdcG‑III | LysR family transcriptional regulator/L‑serine dehydratase |
| ? | NC_002947 | = 3560272 | 65 (1.130) | intergenic (‑130/‑17) | PP_3143/tdcG‑III | LysR family transcriptional regulator/L‑serine dehydratase | |||||
TCGCAATAACACTCAATTTCTTCAGACAACCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3560219‑3560251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctGCCCTGACATGCAT‑CCAGGGTAGGGTTGTCTGAAGAAATTGAGTGTTATTGCGATTTTGCGCGATACTGCCGCGCTGGCTCACGGATGACCAACGAAACTTCCTAAGCAAGCCTTTAGTGGTACTAAACGATGCGACGACAACTCAA < NC_002947/3560272‑3560126 TCGCAATAACACTCAATTTCTTCAGACAACCCTGCCCTGACATGCAT‑CCAGGGTAGGG > 1:76753/1‑58TCGCAATAACACTCAATTTCTTCAGACAACCCTGCCCTGACATGCAT‑CCAGGGTAGGG < 2:76753/58‑1 TCAGACAACCCTACCCTG‑GATGCATGTCAGGGCAGGGTTGTCTGAAGAAATTGAGTGTTATTGCGATTTTGCGCGATACTGCCGCGCTGGCTCACGGATGACCAACGAAACTTCCTAAGCAAGCCTTTAGTGG < 1:938237/133‑1 TCAGACAACCCTACCCTG‑GATGCATGTCAGGGCAGGGTTGTCTGAAGAAATTGAGTGTTATTGCGATTTTGCGCGATACTGCCGCGCTGGCTCACGGATGACCAACGAAACTTCCTAAGCAAGCCTTTAGTGG > 2:938237/1‑133 CCCTGCCCTGACATGCAT‑CCAGGGTAGGGTTGTCTGAAGAAATTGAGTGTTATTGCGATTTTGCGCGATACTGCCGCGCTGGCTCACGGATGACCAACGAAACTTCCTAAGCAAGCCTTTAGTG > 1:181077/1‑124 CCCTGCCCTGACATGCAT‑CCAGGGTAGGGTTGTCTGAAGAAATTGAGTGTTATTGCGATTTTGCGCGATACTGCCGCGCTGGCTCACGGATGACCAACGAAACTTCCTAAGCAAGCCTTTAGTG < 2:181077/124‑1 CCTGCCCTGACATGCAT‑CCAGGGTAGGGTTGTCTGAAGAAATTGAGTGTTATTGCGATTTTGCGCGATACTGCCGCGCTGGCTCACGGATGACCAACGAAACTTCCTAAGCAAGCCTTTAGTGGTACTAAACGATGCGACGACAACTCAA > 1:1471037/1‑150 TCGCAATAACACTCAATTTCTTCAGACAACCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3560219‑3560251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctGCCCTGACATGCAT‑CCAGGGTAGGGTTGTCTGAAGAAATTGAGTGTTATTGCGATTTTGCGCGATACTGCCGCGCTGGCTCACGGATGACCAACGAAACTTCCTAAGCAAGCCTTTAGTGGTACTAAACGATGCGACGACAACTCAA < NC_002947/3560272‑3560126 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |