New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5596996 =	61 (1.020)	3 (0.050)	3/234	NT	4.6%	coding (446/1434 nt)	PP_4923	outer membrane efflux protein
	?	NC_002947	5597018 =	64 (1.100)					coding (468/1434 nt)	PP_4923	outer membrane efflux protein
Rejected: Frequency below/above cutoff threshold.

ATAACTGGCTTGGGATTGCAGCACGTCGGTCTTGTCCGAAAGGCCCACGTCGAAACGCTCGTTGGACTGATCCAGCTGGCGCTTGAAGGCGGCTTCTTCTGCCTTGGTGGCGGCCAGGTTGTCCTGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5597126‑5596996 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCACCAAGGCAGAAGAAGCCGCCTTCAAGCGCCAGCTGGATCAGTCCAACGAGCGTTTCGACGTGGGCCTTTCGGACAAGACCGACGTGCTGCAATCCCAAGCCAGTTATGACACTGCACGGGCCAACCGGATCATCGCCGAACGCCAG  >  NC_002947/5597018‑5597165                                                                                                                                                                                                                                                                                         ATAACTGGCTTGGGATTGCCGCACGTCGGTCTTGTCCGAAAGGCCCACGTCGAAACGCTCGTTGGACTGATCCAGCTGGCGCTTGAAGGCGGCTTCTTCTGCCTTGGTGGCGCCCAGGACAACCTGGCCGCCACCAAGGCAGAAGAAGCC                                                                                                                                   <  1:902575/150‑1                                                    GAAACGCTCGTTGGACTGATCCAGCTGGCGCTTGAAGGCGGCTTCTTCTGCCTTGGTGGCGCCCAGGACAACCTGGCCGCCACCAAGGCAGAAGAAGC                                                                                                                                    <  1:1220153/98‑1                                                    GAAACGCTCGTTGGACTGATCCAGCTGGCGCTTGAAGGCGGCTTCTTCTGCCTTGGTGGCGCCCAGGACAACCTGGCCGCCACCAAGGCAGAAGAAGC                                                                                                                                    >  2:1220153/1‑98                                                                                                                                  GCCACCAAGGCAGAAGAAGCCGCCTTCAAGCGCCAGCTGGATCAGTCCAACGAGCGTTTCGACGTGGGCCTTTCGGACAAGACCGACGTGCTGCAATCCCAAGCCAGTTATGACACTGCACGGGCCAACCGGATCATCGCCGAACGCCAG  <  1:945772/150‑1                                                                                                                                                                                                                                                                                         ATAACTGGCTTGGGATTGCAGCACGTCGGTCTTGTCCGAAAGGCCCACGTCGAAACGCTCGTTGGACTGATCCAGCTGGCGCTTGAAGGCGGCTTCTTCTGCCTTGGTGGCGGCCAGGTTGTCCTGGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5597126‑5596996 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCACCAAGGCAGAAGAAGCCGCCTTCAAGCGCCAGCTGGATCAGTCCAACGAGCGTTTCGACGTGGGCCTTTCGGACAAGACCGACGTGCTGCAATCCCAAGCCAGTTATGACACTGCACGGGCCAACCGGATCATCGCCGAACGCCAG  >  NC_002947/5597018‑5597165

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.