New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	15797 =	47 (0.790)	4 (0.070)	4/228	NT	7.9%	intergenic (+47/‑792)	gyrB/PP_5421	DNA gyrase subunit B/hypothetical protein
	?	NC_002947	15834 =	48 (0.840)					intergenic (+84/‑755)	gyrB/PP_5421	DNA gyrase subunit B/hypothetical protein

GCCGCTGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATG  >  NC_002947/15649‑15945                                                                                                                                                     |                                                                                                                                                     gccgcTGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATg                                                                                                                                                     >  2:1482160/1‑150 (MQ=255) atccgcccgccgaccctctcagcacttccagcgccccatcaaatcacttcctcaaatccccccatctgcatcattttccaatgagcggagtagggcgccccggcaggaattccaggcaaaaaaaagcccgcgaaggcgggcttgatggTg                                                                                                                                                     <  1:416116‑M1/2‑1 (MQ=255)          cAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGAccggccgg                                                                                                                                            >  1:404698/1‑150 (MQ=255)          cAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGAccggccgg                                                                                                                                            >  1:1503183/1‑150 (MQ=255)                     agcacttccagcgccccatcaaatcacttcctcaaatccccccatctgcatcattttccaatgagcggagtagggcgccccggcaggaattccaggcaaaaaaaagcccgcgaaggcgggcttgatggTGACCGGCCGGGCTTCAACCAt                                                                                                                                 <  1:718313‑M1/22‑1 (MQ=255)                      acCCTGATGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATg                                                                                                                                <  1:60114/150‑1 (MQ=255)                            aTGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGGGTAGGTTCACAGAAGAGCTGCACGCTTTCACAAATAGTTTACCATCCGTGCTTCAACCATGGCCCCt                                                                                                                          >  2:1162996/1‑150 (MQ=255)                                  gATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCCAACGTGGACTAATGATCAGGTGAAAAGGTTTACAGATTGGCGGTACGCGGTTACAAAGAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGt                                                                                                                    >  2:1004207/1‑150 (MQ=255)                                    tGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCa                                                                                                                  >  1:71325/1‑150 (MQ=255)                                    ccatcaaatcacttcctcaaatccccccatctgcatcattttccaatgagcggagtagggcgccccggcaggaattccaggcaaaaaaaagcccgcgaaggcgggcttgatggTGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCa                                                                                                                  >  2:718313‑M1/114‑150 (MQ=255)                                                    cgtGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCtt                                                                                                  >  2:1313841/1‑150 (MQ=255)                                                       gACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTcgc                                                                                               >  1:311896/1‑150 (MQ=255)                                                         cTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCgg                                                                                             <  2:71325/150‑1 (MQ=255)                                                           tCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGc                                                                                           <  1:1482160/150‑1 (MQ=255)                                                           ccccatctgcatcattttccaatgagcggagtagggcgccccggcaggaattccaggcaaaaaaaaagcccgcgaaggcgggcttgatggTGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCa                                                                                                               >  1:13397‑M1/91‑130 (MQ=255)                                                           ccccatctgcatcattttccaatgagcggagtagggcgccccggcaggaattccaggcaaaaaaaaagcccgcgaaggcgggcttgatggTGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCa                                                                                                               <  2:13397‑M1/40‑1 (MQ=255)                                                                   aGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCtttttttt                                                                                   <  1:1199144/150‑1 (MQ=255)                                                                     tAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGc                                                                                 >  2:1181100/1‑150 (MQ=255)                                                                     tAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGc                                                                                 <  1:1181100/150‑1 (MQ=255)                                                                        cgcgCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTg                                                                              >  2:1115475/1‑150 (MQ=255)                                                                               tCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATgg                                                                                                                               >  1:94454/1‑94 (MQ=255)                                                                               tCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATgg                                                                                                                               <  2:94454/94‑1 (MQ=255)                                                                               tCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTcc                                                                       <  1:271596/150‑1 (MQ=255)                                                                                cGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCt                                                                      <  1:1115475/150‑1 (MQ=255)                                                                                  gtgtCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGAccggcc                                                                                                                                              >  2:110408/1‑76 (MQ=255)                                                                                  gtgtCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGAccggcc                                                                                                                                              <  1:110408/76‑1 (MQ=255)                                                                                       gAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATgg                                                                                                                               >  2:1232646/1‑86 (MQ=255)                                                                                       gAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATgg                                                                                                                               <  1:1232646/86‑1 (MQ=255)                                                                                       gAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTc                                                                        >  1:302703/1‑141 (MQ=255)                                                                                       gAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTc                                                                        <  2:302703/141‑1 (MQ=255)                                                                                       gAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTTCCgggg                                                               >  1:588278/1‑150 (MQ=255)                                                                                       gAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCgggg                                                               <  1:1077312/150‑1 (MQ=255)                                                                                        aaCCTGGACTTCTGATCAGGTGTGTAGGTAGACAGTGAAGGTGCCGGGCTGGAGGGTAACAGCAGCGGCGGTGCGGCAACCATGGCCCCTGTTGGTCACCATTAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGgc                                                              >  1:29961/1‑150 (MQ=255)                                                                                                 ttCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTc                                                     <  1:1313841/150‑1 (MQ=255)                                                                                                   cTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCg                                                   <  1:561863/150‑1 (MQ=255)                                                                                                    tGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAAACCGCCATCGCTTTCTTGGCTGTTCCGGTGATTCCTGCCGGGGCGCCCTACTCCGc                                                  >  1:1599781/1‑150 (MQ=255)                                                                                                      aTCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTCAACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTc                                                <  1:1162996/150‑1 (MQ=255)                                                                                                           gtgtgtAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCAtt                                             >  1:1642454/1‑148 (MQ=255)                                                                                                           gtgtgtAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCAtt                                             <  2:1642454/148‑1 (MQ=255)                                                                                                           gtgtgtAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTgg                                           >  2:845463/1‑150 (MQ=255)                                                                                                                   gTTCACAGAAAAGCTTCACGCTTTCACCAATAGATGATCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAatgat                                   <  2:588278/150‑1 (MQ=255)                                                                                                                    ttCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAatgatg                                  >  1:1027337/1‑150 (MQ=255)                                                                                                                       acaGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAg                               >  2:416116/1‑150 (MQ=255)                                                                                                                                    aCGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTg                  >  2:612946/1‑150 (MQ=255)                                                                                                                                     cGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGa                 <  2:851610/150‑1 (MQ=255)                                                                                                                                      gCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCAGCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATGTGAg                >  1:234665/1‑150 (MQ=255)                                                                                                                                      gCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAg                >  1:786093/1‑150 (MQ=255)                                                                                                                                        tttCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGa              >  2:1160440/1‑150 (MQ=255)                                                                                                                                        tttCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGa              >  2:386535/1‑150 (MQ=255)                                                                                                                                         ttCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGCCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGaa             <  1:1004207/150‑1 (MQ=255)                                                                                                                                              aaaTAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCggg                                                                <  1:854007/94‑1 (MQ=255)                                                                                                                                              aaaTAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCggg                                                                >  2:854007/1‑94 (MQ=255)                                                                                                                                              aaaTAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGAt        >  2:940654/1‑150 (MQ=255)                                                                                                                                                    aTGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATg  <  2:1027337/150‑1 (MQ=255)                                                                                                                                                    aTGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATg  >  1:923134/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCCGCTGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATG  >  NC_002947/15649‑15945

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.