New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5542782 =	49 (0.820)	3 (0.050)	3/240	NT	5.9%	intergenic (‑36/+78)	dnaB/rplI	replicative DNA helicase/50S ribosomal protein L9
	?	NC_002947	5542816 =	47 (0.790)					intergenic (‑70/+44)	dnaB/rplI	replicative DNA helicase/50S ribosomal protein L9

CGGCCTCGATGGAATGCGGCGGTACCTTCAGGGCTGCGGTTTGCAGGTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTACGTCGTATTCGCCAACCTGACGGATGGTGCCGTTCGGC  >  NC_002947/5542668‑5542959                                                                                                                                                     |                                                                                                                                                cGGCCTCGATGGAATGCGGCGGTAGCCTCAGGTCTGCGTTGTGCAGGTCAAGCAGTCCGCGGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGAt                                                                                                                                                <  1:1251976/150‑1 (MQ=255)      acgtagccgtgcacctgcacagcgacgttgaagccaccgtacgcgtggtcgtcgtagctgcctaagctgcgctaactggctggctccttgcgagtcaggcggttaacatAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTaa                                                                                                                                           >  1:1551955‑M1/110‑150 (MQ=255)               tGCGGCGGTACCTTCAGGGCTGCGGTTTGCAGGTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGAc                                                                                                                                  >  2:1442106/1‑150 (MQ=255)                           ttCAGGGCTGCGGTTTGCAGGTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGtt                                                                                                                                             <  1:1044059/127‑1 (MQ=255)                           ttCAGGGCTGCGGTTTGCAGGTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGtt                                                                                                                                             >  2:1044059/1‑127 (MQ=255)                           ttCAGGGCTGCGGTTTGCAGGTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGagcc                                                                                                                      >  2:815382/1‑150 (MQ=255)                              aGGGCTGCGGTTTGCAGGTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGagccagc                                                                                                                   <  2:367312/150‑1 (MQ=255)                                           gCAGGTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTCTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGGCTCGCAAGGAGCCAGCCAGTTAGCGCAGc                                                                                                      <  2:1181418/150‑1 (MQ=255)                                               gTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAgc                                                                                                           >  2:1159431/1‑141 (MQ=255)                                               gTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAgc                                                                                                           <  1:1159431/141‑1 (MQ=255)                                                tCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAgg                                                                                                 <  1:815382/150‑1 (MQ=255)                                                tCAAGCTGTTCGGAGGTGGTGAGCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAgg                                                                                                 <  2:260456/150‑1 (MQ=255)                                                          cGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTacgac                                                                                       <  2:926142/150‑1 (MQ=255)                                                             aGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACgacgac                                                                                    >  2:946443/1‑150 (MQ=255)                                                                  gtgATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGGGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGTGCTGCTTTGTCAGCTACGACGACCAcgc                                                                               <  2:338162/150‑1 (MQ=255)                                                                    gATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGt                                                                             >  2:1279943/1‑150 (MQ=255)                                                                           ttCATGGCCACGAAAGAATTCTGGAGGATGAACAACAACACGCGTACAGCCTGTCGAAAACAGGACCGTGCCCCTTTTCAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTgg                                                                      <  1:1186019/150‑1 (MQ=255)                                                                               tGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTc                                                                                                                                >  2:23782/1‑88 (MQ=255)                                                                               tGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTc                                                                                                                                <  1:23782/88‑1 (MQ=255)                                                                                  ccACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAAc                                                               >  2:616080/1‑150 (MQ=255)                                                                                     cGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTTGCTTCAACGTc                                                            >  1:743458/1‑150 (MQ=255)                                                                                      gAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAg                                                                                                                           >  2:972187/1‑86 (MQ=255)                                                                                      gAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAg                                                                                                                           <  1:972187/86‑1 (MQ=255)                                                                                      gAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAgg                                                                                                 >  1:1145150/1‑112 (MQ=255)                                                                                      gAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAgg                                                                                                 <  2:1145150/112‑1 (MQ=255)                                                                                          gAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCtgt                                                       >  2:1139473/1‑150 (MQ=255)                                                                                           aaTTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCtgtg                                                      >  1:922174/1‑150 (MQ=255)                                                                                                tGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGt                                                 <  2:743458/150‑1 (MQ=255)                                                                                                 ggaggaTGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAg                                                                                                                           >  1:852735/1‑75 (MQ=255)                                                                                                 ggaggaTGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAg                                                                                                                           <  2:852735/75‑1 (MQ=255)                                                                                                  gaggaTGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGc                                               >  1:482497/1‑150 (MQ=255)                                                                                                    ggaTGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCAc                                             <  1:946443/150‑1 (MQ=255)                                                                                                     gaTGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACg                                            <  1:1442106/150‑1 (MQ=255)                                                                                                          aaaaGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAgc                                                                                                           <  1:1488188/82‑1 (MQ=255)                                                                                                          aaaaGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAgc                                                                                                           >  2:1488188/1‑82 (MQ=255)                                                                                                            ttaacatcgggcacggtcctgttttcgacaggccgtgccctATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTAcgt                                     >  1:1551955‑M2/42‑150 (MQ=255)                                                                                                              gACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGGCGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTAcgtcg                                   <  1:292693/150‑1 (MQ=255)                                                                                                              gACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTAcgtcg                                   >  1:1134576/1‑150 (MQ=255)                                                                                                                      gcacggtcctgttttcgacaggccgtgccctATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTacgac                                                                                       >  1:395780‑M2/32‑90 (MQ=255)                                                                                                                      gcacggtcctgttttcgacaggccgtgccctATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTacgac                                                                                       <  2:395780‑M2/59‑1 (MQ=255)                                                                                                                      gCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTACGTCGTATTCGcc                           >  2:75633/1‑150 (MQ=255)                                                                                                                             cTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTACGTCGTATTCGCCAACCTGa                    <  1:1139473/150‑1 (MQ=255)                                                                                                                             cTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTACGTCGTATTCGCCAACCTGa                    >  1:854863/1‑150 (MQ=255)                                                                                                                             cTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTACGTCGTATTCGCCAACCTGa                    >  1:1317427/1‑150 (MQ=255)                                                                                                                                tCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCt                                                         <  1:1567464/110‑1 (MQ=255)                                                                                                                                tCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCt                                                         >  2:1567464/1‑110 (MQ=255)                                                                                                                                   aaaaCAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTACGTCGTATTCGCCAACCTGACGGATg              >  1:314793/1‑150 (MQ=255)                                                                                                                                     aaCAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTACGTCGTATTCGCCAACCTGACGGATGGt            >  1:139456/1‑150 (MQ=255)                                                                                                                                          gACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGCCCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTACGTCGTATTCGCCAACCTGACGGATGGTGCCGt       >  2:703199/1‑150 (MQ=255)                                                                                                                                          gACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTACGTCGTATTCGCCAACCTGACGGATGGTGCCGt       >  2:290231/1‑150 (MQ=255)                                                                                                                                            ccGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAgg                                                                                                 <  2:448071/58‑1 (MQ=255)                                                                                                                                            ccGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAgg                                                                                                 >  1:448071/1‑58 (MQ=255)                                                                                                                                             cGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTACGTCGTATTCGCCAACCTGACGGATGGTGCCGTTCg    >  2:1024304/1‑150 (MQ=255)                                                                                                                                               tGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTACGTCGTATTCGCCAACCTGACGGATGGTGCCGTTCGGc  <  1:75633/150‑1 (MQ=255)                                                                                                                                                  ccGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCAc                                                                                 >  2:847188/1‑68 (MQ=255)                                                                                                                                                  ccGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCAc                                                                                 <  1:847188/68‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                CGGCCTCGATGGAATGCGGCGGTACCTTCAGGGCTGCGGTTTGCAGGTCAAGCTGTTCGGAGGTGGTGATCTCGTTCATGGCCACGAAAGAATTCTGGAGGATGAAAAAGACAAAGGGCACGGCCTGTCGAAAACAGGACCGTGCCCGATGTTAACCGCCTGACTCGCAAGGAGCCAGCCAGTTAGCGCAGCTTAGGCAGCTACGACGACCACGCGTACGGTGGCTTCAACGTCGCTGTGCAGGTGCACGGCTACGTCGTATTCGCCAACCTGACGGATGGTGCCGTTCGGC  >  NC_002947/5542668‑5542959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.