New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5595982	58 (0.970)	3 (0.050)	3/230	NT	5.2%	coding (148/1881 nt)	thiC	phosphomethylpyrimidine synthase
	?	NC_002947	= 5596006	54 (0.940)					coding (124/1881 nt)	thiC	phosphomethylpyrimidine synthase

GGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTGGTCATCACAGGCTC  >  NC_002947/5595872‑5596138                                                                                                                                       |                                                                                                                                     gggCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTCCAGCCGCGTTGTGGCAAACATCGTCGCCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCgg                                                                                                                       <  1:192310/150‑1 (MQ=255)     aGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGgcgc                                                                                                                   >  2:872205/1‑150 (MQ=255)      ggCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGcgcg                                                                                                                  >  2:1272742/1‑150 (MQ=255)       gCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGa                                                                                                                 >  1:1610785/1‑150 (MQ=255)       gCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGa                                                                                                                 >  2:785102/1‑150 (MQ=255)        ccTTTGCGCACATCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAg                                                                                                                <  1:1376542/150‑1 (MQ=255)         cTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGc                                                                                                               >  2:1590729/1‑150 (MQ=255)               gcACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGa                                                                                                         <  2:1610785/150‑1 (MQ=255)               gcACGGCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGa                                                                                                         <  1:573332/150‑1 (MQ=255)                       atgatCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCCGAGCGAGTGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACAcc                                                                                                 >  1:1276104/1‑150 (MQ=255)                           tCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACg                                                                                                                                >  2:871443/1‑115 (MQ=255)                           tCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACg                                                                                                                                <  1:871443/115‑1 (MQ=255)                             aCGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTgcgc                                                                                           <  1:673459/150‑1 (MQ=255)                                tCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGaa                                                                                        <  1:940151/150‑1 (MQ=255)                                    ggTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAAcgcg                                                                                    <  1:1272742/150‑1 (MQ=255)                                     gTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAATGCgg                                                                                   <  1:872205/150‑1 (MQ=255)                                        ggTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGaa                                                                                <  1:936982/150‑1 (MQ=255)                                            tACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATAGGTTGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGt                                                                            <  1:1252615/150‑1 (MQ=255)                                                 gCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCAc                                                                       >  1:573148/1‑150 (MQ=255)                                                   cAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACgg                                                                             >  2:840769/1‑142 (MQ=255)                                                   cAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACgg                                                                             <  1:840769/142‑1 (MQ=255)                                                    aGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGACCGCGGGAACGGTTGccccgg                                                                    >  2:997793/1‑145 (MQ=255)                                                         tgtCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGActgct                                                               <  1:785102/150‑1 (MQ=255)                                                           tCATACACCAACACCGGGGCGTTGGACTCGAGGCCGAAATCGCTCGGGGTGTCATCCCGCCGGATTTCACGCATGGGGACACGGATGTCCGGGCGAGAGCCTTCGACATACACCTTGCGCGAACGCGGGTACAGTTGCACGGActtctgc                                                             >  2:232100/1‑149 (MQ=255)                                                             aTACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCAc                                                                       >  1:1038134/1‑138 (MQ=255)                                                             aTACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCAc                                                                       <  2:1038134/138‑1 (MQ=255)                                                             aTACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATc                                                           >  1:148334/1‑150 (MQ=255)                                                              tACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCg                                                          >  1:1371936/1‑150 (MQ=255)                                                                 acCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACt                                                       >  2:440293/1‑150 (MQ=255)                                                                    aGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTtgt                                                    <  1:778346/150‑1 (MQ=255)                                                                     gCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGActgctg                                                              <  1:1297378/139‑1 (MQ=255)                                                                     gCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGActgctg                                                              >  2:1297378/1‑139 (MQ=255)                                                                                ttGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGga                                                                                                                                    <  1:319919‑M2/58‑3 (MQ=255)                                                                                ttGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGga                                                                                                                                    >  2:319919‑M2/1‑56 (MQ=255)                                                                                     cTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGtt                                   <  2:232857/150‑1 (MQ=255)                                                                                      tCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTg                                  >  1:772117/1‑150 (MQ=255)                                                                                        gccgccGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGAt                                <  2:573148/150‑1 (MQ=255)                                                                                        gccgccGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGAt                                <  1:440293/150‑1 (MQ=255)                                                                                            ccgAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCt                            <  2:1371936/150‑1 (MQ=255)                                                                                              gAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCACGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACGTGCGGCGATTCGCCGAGGTTGATCGCttt                          >  1:1235754/1‑150 (MQ=255)                                                                                                acgcggtcggGGTGCCATCCAGGCTGATTTCACGCATTTGGACACGGATGTCCGGGCGCGACCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGATGATCGACTTGTGCCCATTCGCTGAGTTTGACCGCttttt                        <  2:1235754/147‑1 (MQ=255)                                                                                                      tcggGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGtt                  <  2:592136/150‑1 (MQ=255)                                                                                                        ggggTGTCATCCAGGCTGATTTCACGCATGGGgacaccccgaccgatttcggcggcgagtccaacgccccggtgctggtgtatgacacgtctggcccgtacaccgaccccgacgtgatcatcgacgtgcgcaaaggcctgcccgatgtgc                <  2:1022420‑M2/150‑119 (MQ=255)                                                                                                        ggggTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTg                <  2:148334/150‑1 (MQ=255)                                                                                                           gtgtCATCCAGGCTGATTTCACGCATGGGgacaccccgaccgatttcggcggtgagtccaacgccccggtgctggtgtatgacacgtctggc                                                                       >  2:454990‑M2/1‑29 (MQ=255)                                                                                                           gtgtCATCCAGGCTGATTTCACGCATGGGgacaccccgaccgatttcggcggcgagtccaacgccccggtgctggtgtatgacacgtctggc                                                                       <  1:454990‑M2/92‑64 (MQ=255)                                                                                                                aTCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACtt                                                      >  1:355641/1‑104 (MQ=255)                                                                                                                aTCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACtt                                                      <  2:355641/104‑1 (MQ=255)                                                                                                                aTCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTtgtg                                                   >  1:352897/1‑107 (MQ=255)                                                                                                                aTCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTtgtg                                                   <  2:352897/107‑1 (MQ=255)                                                                                                                aTCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGa                                       >  1:658620/1‑119 (MQ=255)                                                                                                                aTCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGa                                       <  2:658620/119‑1 (MQ=255)                                                                                                                 tCCAGGCTTATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTGGTCATcaca       >  2:1400106/1‑150 (MQ=255)                                                                                                                 tCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGa                                                                                                                 <  2:456903/44‑1 (MQ=255)                                                                                                                 tCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGa                                                                                                                 >  1:456903/1‑44 (MQ=255)                                                                                                                  ccAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCtt                     <  2:188640/135‑1 (MQ=255)                                                                                                                  ccAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCtt                     >  1:188640/1‑135 (MQ=255)                                                                                                                   cAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTGGTCATCACAgg     <  2:1066526/150‑1 (MQ=255)                                                                                                                     ggCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTg                <  2:1570655/137‑1 (MQ=255)                                                                                                                     ggCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTg                >  1:1570655/1‑137 (MQ=255)                                                                                                                      gCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAAAGCGGGACCGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTGGTCATCACAGGctc  >  1:652550/1‑150 (MQ=255)                                                                                                                                       |                                                                                                                                     GGGCAGGCCTTTGCGCACGTCGATGATCACGTCGGGGTCGGTGTACGGGCCAGACGTGTCATACACCAGCACCGGGGCGTTGGACTCGCCGCCGAAATCGGTCGGGGTGTCATCCAGGCTGATTTCACGCATGGGGACACGGATGTCCGGGCGCGAGCCTTCGACATACACCTTGCGCGAACGCGGGAACGGTTGCACGGACTGCTGATCGACTTGTGCCGATTCGCTGAGGTTGATCGCTTTTTCTTGTTTGGTCATCACAGGCTC  >  NC_002947/5595872‑5596138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.