New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2429928 =	21 (0.360)	11 (0.250)	11/198	2.9	49.2%	intergenic (+15/+98)	PP_2129/PP_2130	hypothetical protein/lytic transglycosylase
	?	NC_002947	2430009 =	7 (0.160)					intergenic (+96/+17)	PP_2129/PP_2130	hypothetical protein/lytic transglycosylase

ATTCGGTGATCTACGGGCAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2430105‑2429928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACGGG  >  NC_002947/2430009‑2430149                                                                                                                                                                                                                                                                                                                                 ATTCGGTGATCTACGGGCAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTA                                                                                                                                                                           >  2:586723/1‑150  TTCGGTGATCTACGGGCAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGGGGGTGAACCCGCTCCTACAACGGTTTGAACGGTCGTTGTAG                                                                                                                                                                          >  2:284432/1‑150  TTCGGTGATCTACGGGCAGAAGCTGAATGCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAG                                                                                                                                                                          <  1:1333734/150‑1      GTGATCTACGGGCAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGC                                                                                                                                                                      <  1:586723/150‑1        GATCTACGGGCAGAAGCTGCATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGG                                                                                                                                                                    <  2:962595/150‑1        GATCTACGGGCAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGG                                                                                                                                                                    <  1:1168785/150‑1        GATCTACGGGCAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGG                                                                                                                                                                    <  1:284432/150‑1                       GCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCC                                                                                                                                                            <  2:508754/143‑1                       GCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCC                                                                                                                                                            >  1:508754/1‑143                                        ctTTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTT                                                                                                                                                                              >  1:267557/3‑108                                        CATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTT                                                                                                                                                                              <  2:267557/108‑1                                             GTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGG                                                                                                                                                                   >  1:381098/1‑114                                             GTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGG                                                                                                                                                                   <  2:381098/114‑1                                                                   TCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAG                                                                                                                                                                          >  2:531745/1‑85                                                                   TCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAG                                                                                                                                                                          <  1:531745/85‑1                                                                                                          TTCGCGGGTGAACCCGCTCCTACAAGGGTGTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTT                                                                  >  1:411003/1‑150                                                                                                                 GTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCG                                                           >  1:1169646/1‑150                                                                                                                       CCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCAT                                                                                                                   >  1:1090226/1‑88                                                                                                                       CCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCAT                                                                                                                   <  2:1090226/88‑1                                                                                                                         GCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTA                                                                                                                                             >  2:855950/1‑60                                                                                                                         GCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTA                                                                                                                                             <  1:855950/60‑1                                                                                                                          CTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACC                                                  <  2:1169646/150‑1                                                                                                                           TCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATC                                                                                                                  <  1:842055/85‑1                                                                                                                           TCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATC                                                                                                                  >  2:842055/1‑85                                                                                                                               ACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCTCAACAGCAATCACATG                                                                                                                       >  1:182316/1‑76                                                                                                                               ACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCTCAACAGCAATCACATG                                                                                                                       <  2:182316/76‑1                                                                                                                                                  TTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTG                              >  1:217806/1‑146                                                                                                                                                  TTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTG                              <  2:217806/146‑1                                                                                                                                                        GAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATT                                                                        >  1:817293/1‑98                                                                                                                                                        GAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATT                                                                        <  2:817293/98‑1                                                                                                                                                        GAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCAAATCCACCAATGGCTGCGGTGAATT                                                                        <  1:744389/98‑1                                                                                                                                                        GAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCAAATCCACCAATGGCTGCGGTGAATT                                                                        >  2:744389/1‑98                                                                                                                                                          GCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCG                  >  2:833370/1‑150                                                                                                                                                          GCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCG                  >  1:377016/1‑150                                                                                                                                                              GTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCTTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACC                                                  <  2:1296539/114‑1                                                                                                                                                              GTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTT              >  2:470459/1‑150                                                                                                                                                              GTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACC                                                  >  1:1296539/1‑114                                                                                                                                                                    CCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCCCATGACATGGAAATACCGTGCATGCCAATCCACTTTGGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACAGGCTCGGTTCGTCG        >  1:1200594/1‑150                                                                                                                                                                    CCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCG        >  1:344010/1‑150                                                                                                                                                                    CCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCG        >  1:284352/1‑150                                                                                                                                                                     CGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATC                                                                                             <  1:1174116/64‑1                                                                                                                                                                     CGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATC                                                                                             >  2:1174116/1‑64                                                                                                                                                                        GAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATGGGAATACCGTTGATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACG    >  2:783795/1‑150                                                                                                                                                                        GAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACG    <  1:470459/150‑1                                                                                                                                                                          AGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACGGG  <  1:418374/150‑1                                                                                                                                                                                                                                                                                                                                 ATTCGGTGATCTACGGGCAGAAGCTGAATTCACCGCAGCCATTGGTGGATTGGCATGAACGGTATTTCGATGACATGTGATTGCTGTTGAGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2430105‑2429928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACGGG  >  NC_002947/2430009‑2430149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.