| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2429928 = | 21 (0.360) | 11 (0.250) | 11/198 | 2.9 | 49.2% | intergenic (+15/+98) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase |
| ? | NC_002947 | 2430009 = | 7 (0.160) | intergenic (+96/+17) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase | |||||
CCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACGGG > NC_002947/2429922‑2430149 | ccTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGc > 1:989986/1‑102 (MQ=255)ccTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGc < 2:989986/102‑1 (MQ=255) ttcgcgggtgaacccgctcctacaagggtgtgagcggtcgttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCtt > 1:411003‑M2/74‑150 (MQ=255) GGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGc < 2:508754‑M1/143‑1 (MQ=255) GGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGc > 1:508754‑M1/1‑143 (MQ=255) gtgaacccgctcctacaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggCACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCg > 1:1169646‑M2/67‑150 (MQ=255) CCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATccac < 2:381098‑M1/114‑1 (MQ=255) CCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATccac > 1:381098‑M1/1‑114 (MQ=255) ccgctcctacaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCAt < 2:1090226‑M2/28‑1 (MQ=255) ccgctcctacaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCAt > 1:1090226‑M2/61‑88 (MQ=255) CCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATc < 1:1168785‑M1/150‑1 (MQ=255) CCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATc < 1:284432‑M1/150‑1 (MQ=255) CCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATGCAGCTTCTGCCCGTAGATc < 2:962595‑M1/150‑1 (MQ=255) gctcctacaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggTa < 1:855950‑M2/2‑1 (MQ=255) gctcctacaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggTa > 2:855950‑M2/59‑60 (MQ=255) GCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCAc < 1:586723‑M1/150‑1 (MQ=255) ctcctacaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggCACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCAcc < 2:1169646‑M2/93‑1 (MQ=255) tcctacaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATc > 2:842055‑M2/57‑85 (MQ=255) tcctacaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATc < 1:842055‑M2/29‑1 (MQ=255) CTACAACGACCGTTCAAACCGTTGTAGGAGCGGGTTCACCCCCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGaa > 2:284432‑M1/1‑150 (MQ=255) CTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGa < 1:531745‑M1/85‑1 (MQ=255) CTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGa > 2:531745‑M1/1‑85 (MQ=255) CTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGCATTCAGCTTCTGCCCGTAGATCACCGaa < 1:1333734‑M1/150‑1 (MQ=255) TACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAAt > 2:586723‑M1/1‑150 (MQ=255) acaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggCACAGGCTCAACAGCAATCACATg > 1:182316‑M2/53‑76 (MQ=255) acaagggtttgagcggtcgttgtaggagcgggttcacccgcgaagaggccggCACAGGCTCAACAGCAATCACATg < 2:182316‑M2/24‑1 (MQ=255) AACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCAccaaag > 1:267557‑M1/1‑106 (MQ=255) AACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATg < 2:267557‑M1/108‑1 (MQ=255) tCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGt > 2:1443796/1‑150 (MQ=255) aCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTg > 2:418374/1‑150 (MQ=255) ccTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTa < 1:472691/150‑1 (MQ=255) ccTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTa > 2:472691/1‑150 (MQ=255) cTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATAACATGTTATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTAAGCATCTGCCGGTAGCTCACCGAATACGACAGCACGTTCTCTAc > 2:413964/1‑150 (MQ=38) ttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTg < 2:217806‑M2/113‑1 (MQ=255) ttgtaggagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTg > 1:217806‑M2/34‑146 (MQ=255) gagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAAtt > 1:817293‑M2/28‑98 (MQ=255) gagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAAtt < 2:817293‑M2/71‑1 (MQ=255) gagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCAAATCCACCAATGGCTGCGGTGAAtt < 1:744389‑M2/71‑1 (MQ=255) gagcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCAAATCCACCAATGGCTGCGGTGAAtt > 2:744389‑M2/28‑98 (MQ=255) gcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGgcg > 2:833370‑M2/26‑150 (MQ=255) gcgggttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGgcg > 1:377016‑M2/26‑150 (MQ=255) gttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCTTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCAcc < 2:1296539‑M2/93‑1 (MQ=255) gttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCAcc > 1:1296539‑M2/22‑114 (MQ=255) gttcacccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGtt > 2:470459‑M2/22‑150 (MQ=255) ccgcgaagaggccggTACAGGCTCAACAGCAATCCCATGACATGGAAATACCGTGCATGCCAATCCACTTTGGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACAGGCTCGGTtcgtcg > 1:1200594‑M2/16‑150 (MQ=255) ccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTtcgtcg > 1:344010‑M2/16‑150 (MQ=255) ccgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTtcgtcg > 1:284352‑M2/16‑150 (MQ=255) cgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATc > 2:1174116‑M2/15‑64 (MQ=255) cgcgaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATc < 1:1174116‑M2/50‑1 (MQ=255) gaagaggccggTACAGGCTCAACAGCAATCACATGTCATGGGAATACCGTTGATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACg > 2:783795‑M2/12‑150 (MQ=255) gaagaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACg < 1:470459‑M2/139‑1 (MQ=255) agaggccggTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACggg < 1:418374‑M2/141‑1 (MQ=255) | CCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTGTACATACTGGCGCGTTTCGTCGAACGGG > NC_002947/2429922‑2430149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |